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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.251286 (6 seq.)
>WENV182560988
OJDV01001474
[OJDV] seawater metagenome; Sea water
2011
1936
-
Pro
TGG
[ENA]
¢þ
>WENV183056762
OLHJ01012380
[OLHJ] seawater metagenome; Sea water
1262
1187
-
Pro
TGG
[ENA]
¢þ
>W1511388599
JSWG01000001
Bacteroidota
Psychroserpens jangbogonensis PAMC 27130 [JSWG]
221484
221407
-
Pro
TGG
[ENA]
¡û
>W1511388607
JSWG01000007
Bacteroidota
Psychroserpens jangbogonensis PAMC 27130 [JSWG]
13851
13928
+
Pro
TGG
[ENA]
¡û
>W1511505233
JXJP01000003
Bacteroidota
Psychroserpens mesophilus JCM 13413 [JXJP]
435126
435049
-
Pro
TGG
[ENA]
¡û
>W1511505250
JXJP01000008
Bacteroidota
Psychroserpens mesophilus JCM 13413 [JXJP]
195292
195215
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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