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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.251317 (14 seq.)
>W131146230
AQGT01000002
Bacillota
Pediococcus acidilactici D3 [AQGT]
304181
304255
+
Asn
GTT
[ENA]
¡û
>W1711258429
LYUJ01000020
Bacillota
Pediococcus acidilactici [LYUJ]
110324
110250
-
Asn
GTT
[ENA]
¡û
>W1711585748
MOAB01000001
Bacillota
Pediococcus acidilactici [MOAB]
41918
41992
+
Asn
GTT
[ENA]
¡û
>C171119587
CP021484
Bacillota
Pediococcus acidilactici SRCM100424 [CP021484]
877977
878051
+
Asn
GTT
-
¡û
>C171119644
CP021487
Bacillota
Pediococcus acidilactici SRCM100313 [CP021487]
877920
877994
+
Asn
GTT
-
¡û
>C171120447
CP021529
Bacillota
Pediococcus acidilactici SRCM101189 [CP021529]
877985
878059
+
Asn
GTT
-
¡û
>W141097358
AVGK01000061
Bacillota
Clostridioides difficile CD9 [AVGK]
555
629
+
Asn
GTT
[ENA]
¡û
>WENV183491167
OMGG01000297
[OMGG] human gut metagenome; human gut
25802
25728
-
Asn
GTT
[ENA]
¢þ
>WENV183763949
PPYE01311302
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
13102
13176
+
Asn
GTT
[ENA]
¢þ
>WENV183792305
PPYF01458402
[PPYF] human gut metagenome; stool from patient with Crohn's disease
2366
2440
+
Asn
GTT
[ENA]
¢þ
>C191106200
CP033438
Bacillota
Pediococcus acidilactici ATCC 8042 [CP033438]
933346
933420
+
Asn
GTT
-
¡û
>C191135616
CP035154
Bacillota
Pediococcus acidilactici SRCM103387 [CP035154]
435668
435742
+
Asn
GTT
-
¡û
>W1910181657
BJMF01000002
Bacillota
Pediococcus acidilactici NBRC 12231 [BJMF]
238370
238444
+
Asn
GTT
[ENA]
¡û
>W1611020901
LYUJ01000020
Bacillota
Pediococcus acidilactici [LYUJ]
110324
110250
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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