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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.251446 (5 seq.)
>WENV180320810
OBKQ01024475
[OBKQ] soil metagenome; Clay
276
199
-
Val
GAC
[ENA]
¢þ
>WENV180342236
OBLJ01001586
[OBLJ] soil metagenome; Clay
645
568
-
Val
GAC
[ENA]
¢þ
>WENV181286280
OFGV01011168
[OFGV] soil metagenome; Clay
923
846
-
Val
GAC
[ENA]
¢þ
>WENV181293201
OFHG01000277
[OFHG] soil metagenome; Clay
18729
18652
-
Val
GAC
[ENA]
¢þ
>WENV181294530
OFHH01007278
[OFHH] soil metagenome; Clay
1674
1751
+
Val
GAC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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