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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.251503 (90 seq.)
>W1710860500
LMCX01000002
Actinomycetota
Yonghaparkia sp. Root332 [LMCX]
589615
589690
+
Asn
GTT
[ENA]
¡û
>W1710866735
LMHS01000002
Actinomycetota
Microbacterium sp. Root180 [LMHS]
207149
207224
+
Asn
GTT
[ENA]
¡û
>W1710867776
LMIO01000002
Actinomycetota
Leifsonia sp. Root227 [LMIO]
803791
803864
+
Asn
GTT
[ENA]
¡û
>W1710872353
LMLX01000005
Actinomycetota
Agreia sp. Leaf244 [LMLX]
286194
286269
+
Asn
GTT
[ENA]
¡û
>W1710873144
LMMO01000003
Actinomycetota
Frigoribacterium sp. Leaf263 [LMMO]
631179
631254
+
Asn
GTT
[ENA]
¡û
>W1710873977
LMNF01000002
Actinomycetota
Agreia sp. Leaf283 [LMNF]
372276
372201
-
Asn
GTT
[ENA]
¡û
>W1710875758
LMOQ01000002
Actinomycetota
Agreia sp. Leaf335 [LMOQ]
318266
318191
-
Asn
GTT
[ENA]
¡û
>W1710876054
LMOX01000001
Actinomycetota
Frigoribacterium sp. Leaf164 [LMOX]
1160338
1160413
+
Asn
GTT
[ENA]
¡û
>W1710876139
LMOZ01000001
Actinomycetota
Leifsonia sp. Leaf336 [LMOZ]
1689024
1689099
+
Asn
GTT
[ENA]
¡û
>W1710881124
LMSV01000002
Actinomycetota
Yonghaparkia sp. Soil809 [LMSV]
582552
582627
+
Asn
GTT
[ENA]
¡û
>W131165198
ARBJ01000042
Actinomycetota
Actinoplanes globisporus DSM 43857 [ARBJ]
38311
38384
+
Asn
GTT
[ENA]
¡û
>W131218463
ATXT01000011
Actinomycetota
Humibacter albus DSM 18994 [ATXT]
454150
454075
-
Asn
GTT
[ENA]
¡û
>W131162253
AQYK01000001
Actinomycetota
Leifsonia sp. 109 [AQYK]
2122664
2122737
+
Asn
GTT
[ENA]
¡û
>W131184628
ARTB01000001
Actinomycetota
Cryocola sp. 340MFSha3.1 [ARTB]
153921
153848
-
Asn
GTT
[ENA]
¡û
>W131242093
CAAG010000102
Actinomycetota
Tropheryma whipplei str. Dig15 [CAAG]
66732
66805
+
Asn
GTT
[ENA]
¡û
>W131242135
CAAH010000099
Actinomycetota
Tropheryma whipplei str. Endo32 [CAAH]
66729
66802
+
Asn
GTT
[ENA]
¡û
>W131242177
CAAO010000111
Actinomycetota
Tropheryma whipplei str. Slow2 [CAAO]
66729
66802
+
Asn
GTT
[ENA]
¡û
>W131249889
CAUD01000099
Actinomycetota
Tropheryma whipplei str. Neuro1 [CAUD]
66734
66807
+
Asn
GTT
[ENA]
¡û
>W131250366
CAUP010000092
Actinomycetota
Tropheryma whipplei str. Dig7 [CAUP]
66733
66806
+
Asn
GTT
[ENA]
¡û
>W131250408
CAUQ010000081
Actinomycetota
Tropheryma whipplei str. Dig10 [CAUQ]
66732
66805
+
Asn
GTT
[ENA]
¡û
>W131250450
CAUR010000084
Actinomycetota
Tropheryma whipplei str. Neuro14 [CAUR]
66734
66807
+
Asn
GTT
[ENA]
¡û
>W131250534
CAUT010000076
Actinomycetota
Tropheryma whipplei str. Sali28 [CAUT]
66735
66808
+
Asn
GTT
[ENA]
¡û
>W131250576
CAUU010000098
Actinomycetota
Tropheryma whipplei str. Art29 [CAUU]
66734
66807
+
Asn
GTT
[ENA]
¡û
>W131250617
CAUV010000102
Actinomycetota
Tropheryma whipplei str. Pneumo30 [CAUV]
66734
66807
+
Asn
GTT
[ENA]
¡û
>W131250659
CAUW010000094
Actinomycetota
Tropheryma whipplei str. DigADP25 [CAUW]
66734
66807
+
Asn
GTT
[ENA]
¡û
>W131250701
CAUX010000081
Actinomycetota
Tropheryma whipplei str. Neuro20 [CAUX]
66733
66806
+
Asn
GTT
[ENA]
¡û
>W131250826
CAVB010000093
Actinomycetota
Tropheryma whipplei str. Bcu26 [CAVB]
66728
66801
+
Asn
GTT
[ENA]
¡û
>W1711505282
MKVJ01000013
Actinomycetota
Leifsonia sp. 71-9 [MKVJ]
81118
81043
-
Asn
GTT
[ENA]
¡û
>C171111602
CP020715
Actinomycetota
Cnuibacter physcomitrellae [CP020715]
2123204
2123129
-
Asn
GTT
-
¡û
>C026018
AE014184
Actinomycetota
Tropheryma whipplei str. Twist [AE014184]
371436
371508
+
Asn
GTT
[Ensembl]
¡û
>WENV180016237
FSUF01001676
[FSUF] metagenome; soil
324
251
-
Asn
GTT
[ENA]
¢þ
>WENV180017269
FSWR01000042
[FSWR] metagenome; soil
152976
153049
+
Asn
GTT
[ENA]
¢þ
>WENV180018358
FSYX01000321
[FSYX] metagenome; soil
9011
8938
-
Asn
GTT
[ENA]
¢þ
>WENV180023787
FTIF01000373
[FTIF] metagenome; soil
15579
15652
+
Asn
GTT
[ENA]
¢þ
>WENV180026273
FTIT01000589
[FTIT] metagenome; soil
5732
5805
+
Asn
GTT
[ENA]
¢þ
>WENV180033458
FTKK01000369
[FTKK] metagenome; soil
2430
2503
+
Asn
GTT
[ENA]
¢þ
>WENV180094472
MTBK01008744
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
732
807
+
Asn
GTT
[ENA]
¢þ
>WENV180285100
OBID01223386
[OBID] metagenome; sludge
320
247
-
Asn
GTT
[ENA]
¢þ
>WENV181188345
OEOE01092277
[OEOE] activated sludge metagenome; Activated Sludge
263
190
-
Asn
GTT
[ENA]
¢þ
>WENV181189345
OEOF01028314
[OEOF] activated sludge metagenome; Activated Sludge
417
344
-
Asn
GTT
[ENA]
¢þ
>WENV181226883
OFDN01000271
[OFDN] hot springs metagenome; Water
45173
45098
-
Asn
GTT
[ENA]
¢þ
>W141146498
AWVQ01000137
Actinomycetota
Leifsonia aquatica ATCC 14665 [AWVQ]
10070
10145
+
Asn
GTT
[ENA]
¡û
>W141188397
AYMR01000007
Actinomycetota
Leifsonia aquatica H1aii [AYMR]
431215
431140
-
Asn
GTT
[ENA]
¡û
>W141223292
BADC01001062
Actinomycetota
Corynebacterium-like bacterium B27 [BADC]
9490
9415
-
Asn
GTT
[ENA]
¡û
>W141242932
CAIZ01000164
Actinomycetota
Phycicoccus elongatus Lp2 [CAIZ]
14905
14832
-
Asn
GTT
[ENA]
¡û
>WENV170011396
APMI01062922
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
74
1
-
Asn
GTT
[ENA]
¢þ
>WENV170011495
APMI01069536
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
137
64
-
Asn
GTT
[ENA]
¢þ
>WENV170177189
CEOS01220277
[CEOS] marine metagenome genome assembly TARA_056_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
907
980
+
Asn
GTT
[ENA]
¢þ
>WENV170712701
LNFM01016739
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
2189
2264
+
Asn
GTT
[ENA]
¢þ
>WENV170974687
MTKY01071788
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
5760
5685
-
Asn
GTT
[ENA]
¢þ
>WENV170978542
MTKZ01053650
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
920
995
+
Asn
GTT
[ENA]
¢þ
>C181169625
CP028913
Actinomycetota
Agromyces badenianii MF30-A [CP028913]
1421486
1421559
+
Asn
GTT
-
¡û
>C181196589
CP031192
Actinomycetota
Humibacter sp. BT305 [CP031192]
2323571
2323644
+
Asn
GTT
-
¡û
>C191011710
CP014619
Actinomycetota
Frondihabitans sp. 762G35 [CP014619]
1697419
1697492
+
Asn
GTT
-
¡û
>C191144029
CP035494
Actinomycetota
Microbacterium protaetiae DFW100M-13 [CP035494]
3450023
3449950
-
Asn
GTT
-
¡û
>W1910225140
FMSE01000002
Actinomycetota
Microbacteriaceae bacterium Alg239_V181 [FMSE]
20597
20670
+
Asn
GTT
[ENA]
¡û
>C141007912
CP006734
Actinomycetota
Leifsonia xyli subsp. cynodontis DSM 46306 [CP006734]
1323613
1323540
-
Asn
GTT
[Ensembl]
¡û
>W1910857504
NBWZ01000001
Actinomycetota
Subtercola boreus K300 [NBWZ]
2147481
2147554
+
Asn
GTT
[ENA]
¡û
>W1911685542
QKTM01000001
Actinomycetota
Curtobacterium sp. MCBD17_035 [QKTM]
284492
284565
+
Asn
GTT
[ENA]
¡û
>W1911685593
QKTN01000002
Actinomycetota
Curtobacterium sp. MCBD17_034 [QKTN]
259709
259782
+
Asn
GTT
[ENA]
¡û
>W1911685720
QKTQ01000001
Actinomycetota
Curtobacterium sp. MCBD17_028 [QKTQ]
261110
261183
+
Asn
GTT
[ENA]
¡û
>W1911685883
QKTT01000010
Actinomycetota
Curtobacterium sp. MCBD17_019 [QKTT]
40015
40088
+
Asn
GTT
[ENA]
¡û
>W1911685906
QKTU01000001
Actinomycetota
Curtobacterium sp. MCBD17_013 [QKTU]
296892
296819
-
Asn
GTT
[ENA]
¡û
>W1911686063
QKVS01000001
Actinomycetota
Curtobacterium sp. MCBD17_031 [QKVS]
259706
259779
+
Asn
GTT
[ENA]
¡û
>W1911798568
QYRT01000005
Actinomycetota
Subtercola vilae DB165 [QYRT]
98388
98315
-
Asn
GTT
[ENA]
¡û
>SRA1001922
SRR001308.134126
Metagenomic characterization of a wastewater treatment plant (SRP000180)
14
87
+
Asn
GTT
[SRA]
>W1810089928
PGFB01000002
Actinomycetota
Compostimonas suwonensis DSM 25625 [PGFB]
236885
236812
-
Asn
GTT
[ENA]
¡û
>W1810169253
PJJX01000002
Actinomycetota
Terrimesophilobacter mesophilus CGMCC1.10440 [PJJX]
568651
568578
-
Asn
GTT
[ENA]
¡û
>W1810277347
PSTT01000108
Actinomycetota
Subtercola sp. Z020 [PSTT]
1586
1513
-
Asn
GTT
[ENA]
¡û
>W1810886023
QUNT01000001
Actinomycetota
Agromyces sp. OV568 [QUNT]
1090169
1090096
-
Asn
GTT
[ENA]
¡û
>W1510063978
CDAR01000010
Actinomycetota
Microbacterium gorillae G3 [CDAR]
218759
218834
+
Asn
GTT
[ENA]
¡û
>W1511398181
JTDK01000006
Actinomycetota
Microbacterium mangrovi MUSC 115 [JTDK]
173831
173906
+
Asn
GTT
[ENA]
¡û
>W1511524498
JYFC01000001
Actinomycetota
Agreia bicolorata VKM Ac-1804 [JYFC]
167796
167721
-
Asn
GTT
[ENA]
¡û
>C161073129
CP014513
Actinomycetota
Frondihabitans sp. PAMC 28766 [CP014513]
2938726
2938799
+
Asn
GTT
[Ensembl]
¡û
>C161076877
CP014761
Actinomycetota
Leifsonia xyli SE134 [CP014761]
545605
545532
-
Asn
GTT
[Ensembl]
¡û
>W1610069871
BCSV01000004
Actinomycetota
Curtobacterium ammoniigenes NBRC 101786 [BCSV]
112219
112144
-
Asn
GTT
[ENA]
¡û
>W1610722846
LMCX01000002
Actinomycetota
Yonghaparkia sp. Root332 [LMCX]
589615
589690
+
Asn
GTT
[ENA]
¡û
>W1610729081
LMHS01000002
Actinomycetota
Microbacterium sp. Root180 [LMHS]
207149
207224
+
Asn
GTT
[ENA]
¡û
>W1610730122
LMIO01000002
Actinomycetota
Leifsonia sp. Root227 [LMIO]
803791
803864
+
Asn
GTT
[ENA]
¡û
>W1610734699
LMLX01000005
Actinomycetota
Agreia sp. Leaf244 [LMLX]
286194
286269
+
Asn
GTT
[ENA]
¡û
>W1610735490
LMMO01000003
Actinomycetota
Frigoribacterium sp. Leaf263 [LMMO]
631179
631254
+
Asn
GTT
[ENA]
¡û
>W1610736323
LMNF01000002
Actinomycetota
Agreia sp. Leaf283 [LMNF]
372276
372201
-
Asn
GTT
[ENA]
¡û
>W1610738104
LMOQ01000002
Actinomycetota
Agreia sp. Leaf335 [LMOQ]
318266
318191
-
Asn
GTT
[ENA]
¡û
>W1610738400
LMOX01000001
Actinomycetota
Frigoribacterium sp. Leaf164 [LMOX]
1160338
1160413
+
Asn
GTT
[ENA]
¡û
>W1610738485
LMOZ01000001
Actinomycetota
Leifsonia sp. Leaf336 [LMOZ]
1689024
1689099
+
Asn
GTT
[ENA]
¡û
>W1610743470
LMSV01000002
Actinomycetota
Yonghaparkia sp. Soil809 [LMSV]
582552
582627
+
Asn
GTT
[ENA]
¡û
>W1710067244
BCSV01000004
Actinomycetota
Curtobacterium ammoniigenes NBRC 101786 [BCSV]
112219
112144
-
Asn
GTT
[ENA]
¡û
>W1710532024
FNPZ01000002
Actinomycetota
Herbiconiux ginsengi [FNPZ]
114099
114174
+
Asn
GTT
[ENA]
¡û
>W1710568267
FOTM01000005
Actinomycetota
Leifsonia sp. CL147 [FOTM]
105297
105224
-
Asn
GTT
[ENA]
¡û
>W1710602490
FUYG01000002
Actinomycetota
Agreia bicolorata VKM Ac-2052 [FUYG]
258382
258307
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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