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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.251517 (76 seq.)
>W1710807297
LKCX01000001
Betaproteobacteria
Curvibacter sp. PAE-UM [LKCX]
77860
77785
-
Thr
TGT
[ENA]
¡û
>W131104524
APCR01000192
Betaproteobacteria
Comamonas sp. B-9 [APCR]
911
986
+
Thr
TGT
[ENA]
¡û
>W1711076423
LSLI01000003
Betaproteobacteria
Candidatus Gallionella acididurans [LSLI]
35112
35187
+
Thr
TGT
[ENA]
¡û
>W1711394975
MESP01000045
Betaproteobacteria
Burkholderiales bacterium RIFOXYC2_FULL_59_8 [MESP]
276
201
-
Thr
TGT
[ENA]
¡û
>W1711395016
MESQ01000055
Betaproteobacteria
Burkholderiales bacterium RIFOXYD12_FULL_59_19 [MESQ]
129392
129317
-
Thr
TGT
[ENA]
¡û
>W1711395031
MESR01000177
Betaproteobacteria
Burkholderiales bacterium RIFOXYD2_FULL_59_8 [MESR]
4463
4538
+
Thr
TGT
[ENA]
¡û
>W1711413665
MGWQ01000155
Betaproteobacteria
Gallionellales bacterium GWA2_59_43 [MGWQ]
9458
9383
-
Thr
TGT
[ENA]
¡û
>W1711413775
MGWU01000243
Betaproteobacteria
Gallionellales bacterium RBG_16_56_9 [MGWU]
3877
3802
-
Thr
TGT
[ENA]
¡û
>W1711413812
MGXD01000180
Betaproteobacteria
Gallionellales bacterium RIFOXYB12_FULL_54_9 [MGXD]
821
746
-
Thr
TGT
[ENA]
¡û
>W1711581701
MNUL01000092
Betaproteobacteria
Comamonadaceae bacterium CG1_02_60_18 [MNUL]
36173
36248
+
Thr
TGT
[ENA]
¡û
>W1711583959
MNXW01000194
Betaproteobacteria
Comamonadaceae bacterium CG2_30_57_122 [MNXW]
10728
10803
+
Thr
TGT
[ENA]
¡û
>W1711584032
MNXY01000183
Betaproteobacteria
Comamonadaceae bacterium CG2_30_60_41 [MNXY]
11775
11850
+
Thr
TGT
[ENA]
¡û
>W1711709041
MSYM01000001
Betaproteobacteria
Rhodoferax antarcticus ANT.BR [MSYM]
161301
161226
-
Thr
TGT
[ENA]
¡û
>W1711721731
MTJN01000002
Betaproteobacteria
Rhodoferax fermentans [MTJN]
1250599
1250524
-
Thr
TGT
[ENA]
¡û
>W1711751409
MUNS01000039
Betaproteobacteria
Polaromonas sp. C04 [MUNS]
17545
17470
-
Thr
TGT
[ENA]
¡û
>C171091627
CP019236
Betaproteobacteria
Rhodoferax koreense DCY-110 [CP019236]
1447122
1447197
+
Thr
TGT
-
¡û
>C171091736
CP019240
Betaproteobacteria
Rhodoferax antarcticus DSM 24876 [CP019240]
3101157
3101082
-
Thr
TGT
-
¡û
>C171118118
CP021361
Betaproteobacteria
Acidovorax carolinensis NA3 [CP021361]
3396368
3396293
-
Thr
TGT
-
¡û
>C171118142
CP021362
Betaproteobacteria
Acidovorax carolinensis P3 [CP021362]
734254
734329
+
Thr
TGT
-
¡û
>C171118220
CP021366
Betaproteobacteria
Acidovorax carolinensis P4 [CP021366]
3347002
3346927
-
Thr
TGT
-
¡û
>W131227139
AUEX01000035
Betaproteobacteria
Acidovorax sp. JHL-9 [AUEX]
25928
25853
-
Thr
TGT
[ENA]
¡û
>C018609
CP000267
Betaproteobacteria
Rhodoferax ferrireducens T118 DSM 15236 [CP000267]
3275036
3275111
+
Thr
TGT
[Ensembl]
¡û
>WENV180022095
FTFO01000317
[FTFO] metagenome; soil
8146
8071
-
Thr
TGT
[ENA]
¢þ
>WENV180038462
FZPW01000017
[FZPW] metagenome; underground water
1
76
+
Thr
TGT
[ENA]
¢þ
>WENV180038473
FZPW01000056
[FZPW] metagenome; underground water
4193
4268
+
Thr
TGT
[ENA]
¢þ
>WENV180038574
FZPZ01000158
[FZPZ] metagenome; underground water
20941
21016
+
Thr
TGT
[ENA]
¢þ
>w008234
AAJK01000023
Betaproteobacteria
Rhodoferax ferrireducens DSM 15236 [AAJK]
13874
13951
+
Thr
TGT
[ENA]
¡û
>WENV180260173
OBEQ011176525
[OBEQ] groundwater metagenome; groundwater
1270
1195
-
Thr
TGT
[ENA]
¢þ
>WENV180283531
OBID01000509
[OBID] metagenome; sludge
12728
12653
-
Thr
TGT
[ENA]
¢þ
>WENV180285959
OBID01856359
[OBID] metagenome; sludge
129
54
-
Thr
TGT
[ENA]
¢þ
>WENV181170739
OEIV010081655
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
622
697
+
Thr
TGT
[ENA]
¢þ
>WENV181364919
OFPG01000009
[OFPG] sediment metagenome; Lake sediment
23467
23392
-
Thr
TGT
[ENA]
¢þ
>WENV181365231
OFPM01000520
[OFPM] sediment metagenome; Lake sediment
888
963
+
Thr
TGT
[ENA]
¢þ
>WENV181365437
OFPR01000068
[OFPR] sediment metagenome; Lake sediment
1050
975
-
Thr
TGT
[ENA]
¢þ
>WENV181369522
OFQP01006189
[OFQP] freshwater metagenome; Freshwater Lake
254
179
-
Thr
TGT
[ENA]
¢þ
>WENV181370103
OFQR01017473
[OFQR] freshwater metagenome; Freshwater Lake
497
422
-
Thr
TGT
[ENA]
¢þ
>WENV181370649
OFQT01001740
[OFQT] freshwater metagenome; Freshwater Lake
1747
1672
-
Thr
TGT
[ENA]
¢þ
>WENV181379374
OFRD01000851
[OFRD] wastewater metagenome; Exp Tend CN 100WW
4632
4707
+
Thr
TGT
[ENA]
¢þ
>WENV181380093
OFRD01030068
[OFRD] wastewater metagenome; Exp Tend CN 100WW
823
898
+
Thr
TGT
[ENA]
¢þ
>WENV181385351
OFRI01071320
[OFRI] wastewater metagenome; Exp Tend VB 90WW
481
556
+
Thr
TGT
[ENA]
¢þ
>WENV181400695
OFSF01018798
[OFSF] wastewater metagenome; Exp Tend VB 100WW
481
556
+
Thr
TGT
[ENA]
¢þ
>W141278753
JAFU01000001
Betaproteobacteria
Acidovorax sp. JHL-3 [JAFU]
1544155
1544230
+
Thr
TGT
[ENA]
¡û
>WENV183661416
ORJL010106962
[ORJL] groundwater metagenome; groundwater
392
317
-
Thr
TGT
[ENA]
¢þ
>WENV170011524
APMI01072165
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1199
1124
-
Thr
TGT
[ENA]
¢þ
>WENV170555871
CXWL01002742
[CXWL] groundwater metagenome; biofilm material
12240
12165
-
Thr
TGT
[ENA]
¢þ
>WENV170639606
JFJP01005311
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
27485
27560
+
Thr
TGT
[ENA]
¢þ
>WENV170639637
JFJP01005515
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
13014
13089
+
Thr
TGT
[ENA]
¢þ
>WENV170639676
JFJP01005847
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
5810
5735
-
Thr
TGT
[ENA]
¢þ
>WENV170639703
JFJP01005996
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
4728
4803
+
Thr
TGT
[ENA]
¢þ
>WENV170639713
JFJP01006148
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
78
3
-
Thr
TGT
[ENA]
¢þ
>WENV170639759
JFJP01007121
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
607
532
-
Thr
TGT
[ENA]
¢þ
>WENV170639836
JFJP01009467
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
3172
3247
+
Thr
TGT
[ENA]
¢þ
>WENV170706809
LNAP01007064
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
5535
5610
+
Thr
TGT
[ENA]
¢þ
>WENV170706948
LNAP01009531
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
4906
4981
+
Thr
TGT
[ENA]
¢þ
>WENV170708035
LNAP01045339
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
1277
1352
+
Thr
TGT
[ENA]
¢þ
>WENV170961879
MLJW01004322
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
143
218
+
Thr
TGT
[ENA]
¢þ
>W09133904
ACQT01000019
Betaproteobacteria
Acidovorax delafieldii 2AN [ACQT]
32249
32174
-
Thr
TGT
[ENA]
¡û
>W141561756
JHYS01000006
Betaproteobacteria
Simplicispira psychrophila DSM 11588 [JHYS]
28448
28523
+
Thr
TGT
[ENA]
¡û
>W1910700251
MESI01000102
Betaproteobacteria
Burkholderiales bacterium RIFCSPLOWO2_12_FULL_61_40 [MESI]
81512
81587
+
Thr
TGT
[ENA]
¡û
>W1910744102
MHZY01000082
Betaproteobacteria
Rhodoferax sp. RIFCSPLOWO2_12_FULL_60_11 [MHZY]
586
661
+
Thr
TGT
[ENA]
¡û
>SRA1002169
SRR001308.282555
Metagenomic characterization of a wastewater treatment plant (SRP000180)
159
234
+
Thr
TGT
[SRA]
>SRA1002244
SRR001308.325557
Metagenomic characterization of a wastewater treatment plant (SRP000180)
7
82
+
Thr
TGT
[SRA]
>SRA1002806
SRR002326.30734
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
134
59
-
Thr
TGT
[SRA]
>SRA1003348
SRR002326.405318
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
120
195
+
Thr
TGT
[SRA]
>W1810570298
QEII01000236
Betaproteobacteria
Rhodoferax ferrireducens OTU1 [QEII]
117040
117115
+
Thr
TGT
[ENA]
¡û
>W1810577608
QEOJ01000003
Betaproteobacteria
Rhodoferax sp. YR267 [QEOJ]
227489
227564
+
Thr
TGT
[ENA]
¡û
>W1810580640
QETI01000013
Betaproteobacteria
Comamonas sp. JNW [QETI]
115725
115650
-
Thr
TGT
[ENA]
¡û
>W1810677465
QKMS01000012
Betaproteobacteria
Acidovorax sp. OV235 [QKMS]
97801
97876
+
Thr
TGT
[ENA]
¡û
>W1810696136
QLTA01000012
Betaproteobacteria
Paracidovorax anthurii CFPB 3232 [QLTA]
62425
62350
-
Thr
TGT
[ENA]
¡û
>W1810697067
QLTU01000002
Betaproteobacteria
Acidovorax defluvii DSM 12644 [QLTU]
87240
87165
-
Thr
TGT
[ENA]
¡û
>W1810750675
QOZT01000005
Betaproteobacteria
Acidovorax sp. BoFeN1 [QOZT]
7508
7433
-
Thr
TGT
[ENA]
¡û
>W1510766061
JANU01000003
Betaproteobacteria
Caenimonas sp. SL110 [JANU]
127957
127882
-
Thr
TGT
[ENA]
¡û
>W1610671401
LKCX01000001
Betaproteobacteria
Curvibacter sp. PAE-UM [LKCX]
77860
77785
-
Thr
TGT
[ENA]
¡û
>W1610915728
LSLI01000003
Betaproteobacteria
Candidatus Gallionella acididurans [LSLI]
35112
35187
+
Thr
TGT
[ENA]
¡û
>W1710524816
FNJA01000003
Betaproteobacteria
Rhodoferax sp. OV413 OV413 [FNJA]
344046
343971
-
Thr
TGT
[ENA]
¡û
>W1710532530
FNQJ01000027
Betaproteobacteria
Acidovorax soli [FNQJ]
717
642
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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