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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.252011 (4 seq.)
>W1711065978
LSCF01000011
Unclassified
Marinimicrobia bacterium TCS55 [LSCF]
21840
21915
+
Pro
TGG
[ENA]
¡û
>WENV183746946
PPCM01000059
[PPCM] marine sediment metagenome; marine sediment
41849
41924
+
Pro
TGG
[ENA]
¢þ
>WENV170740327
LULR01005556
[LULR] marine metagenome; Red Sea water column Station 108 - depth 500m
2535
2610
+
Pro
TGG
[ENA]
¢þ
>W1610906592
LSCF01000011
Unclassified
Marinimicrobia bacterium TCS55 [LSCF]
21840
21915
+
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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