This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.252148 (9 seq.)
>WENV183700480
PDMW01015241
[PDMW] marine metagenome; viruses from water sample; < 0.22 micron filtered, nuclease treated, low buoyant density
3312
3237
-
Pro
GGG
[ENA]
¢þ
>WENV183701542
PDMX01152614
[PDMX] marine metagenome; viruses from water sample; < 0.22 micron filtered, nuclease treated
250
325
+
Pro
GGG
[ENA]
¢þ
>WENV170377499
CETU01162667
[CETU] marine metagenome genome assembly TARA_142_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
565
488
-
Pro
GGG
[ENA]
¢þ
>WENV170485587
CEVN01119531
[CEVN] marine metagenome genome assembly TARA_142_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
227
304
+
Pro
GGG
[ENA]
¢þ
>WENV170805043
MDSW01057748
[MDSW] marine metagenome; seawater
37
114
+
Pro
GGG
[ENA]
¢þ
>WENV170814522
MDSW01218648
[MDSW] marine metagenome; seawater
234
311
+
Pro
GGG
[ENA]
¢þ
>WENV170840833
MDSZ01211915
[MDSZ] marine metagenome; seawater
140
63
-
Pro
GGG
[ENA]
¢þ
>WENV170876944
MDTC01049176
[MDTC] marine metagenome; seawater
6172
6097
-
Pro
GGG
[ENA]
¢þ
>WENV003686
AACY020101731
Marine microbial communities from Global Ocean Sampling (GOS)
632
709
+
Pro
GGG
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK