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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.252732 (10 seq.)
>A171002163
CP002670
Euryarchaeota
Pyrococcus sp. NA2 [CP002670]
655238
655315
+
Ala
TGC
-
¡û
>A171003258
CP003534
Euryarchaeota
Pyrococcus sp. ST04 [CP003534]
283063
283140
+
Ala
TGC
-
¡û
>A171003367
CP003685
Euryarchaeota
Pyrococcus furiosus COM1 [CP003685]
1357676
1357599
-
Ala
TGC
-
¡û
>A171005860
CP010835
Euryarchaeota
Pyrococcus kukulkanii NCB100 [CP010835]
93359
93436
+
Ala
TGC
-
¡û
>A171007493
LN999010
Euryarchaeota
Thermococcus chitonophagus [LN999010]
309467
309544
+
Ala
TGC
-
¡û
>At1780
AL096836
Euryarchaeota
Pyrococcus abyssi [AL096836]
206606
206683
+
Ala
TGC
[Ensembl]
¡û
>At1825
AE009950
Euryarchaeota
Pyrococcus furiosus DSM 3638 [AE009950]
138486
138563
+
Ala
TGC
[Ensembl]
¡û
>At1872
BA000001
Euryarchaeota
Pyrococcus horikoshii OT3 [BA000001]
192530
192607
+
Ala
TGC
[Ensembl]
¡û
>ENV001439
AY878144
Environmental sample from ENV division of INSDC
61
140
+
Ala
TGC
[ENA]
>ENV001440
AY878145
Environmental sample from ENV division of INSDC
61
140
+
Ala
TGC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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