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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.253185 (12 seq.)
>C171021621
CP013197
Mycoplasmatota
Spiroplasma citri R8-A2 [CP013197]
513532
513607
+
Thr
TGT
-
¡û
>C171021635
CP013197
Mycoplasmatota
Spiroplasma citri R8-A2 [CP013197]
1372529
1372454
-
Thr
TGT
-
¡û
>W131038850
AMGI01000005
Mycoplasmatota
Spiroplasma melliferum IPMB4A [AMGI]
8338
8263
-
Thr
TGT
[ENA]
¡û
>W131038862
AMGI01000021
Mycoplasmatota
Spiroplasma melliferum IPMB4A [AMGI]
20785
20860
+
Thr
TGT
[ENA]
¡û
>WENV170596437
FUHO01000025
[FUHO] jellyfish metagenome; jellyfish
8989
9064
+
Thr
TGT
[ENA]
¢þ
>C181195181
CP031088
Mycoplasmatota
Spiroplasma phoeniceum P40 [CP031088]
253453
253378
-
Thr
TGT
-
¡û
>C191063179
CP029202
Mycoplasmatota
Spiroplasma melliferum AS576 [CP029202]
469661
469736
+
Thr
TGT
-
¡û
>W1810119984
PHSJ01000001
Mycoplasmatota
Spiroplasma melliferum CH-1 [PHSJ]
83078
83003
-
Thr
TGT
[ENA]
¡û
>W1810339322
PUUH01000032
Mycoplasmatota
Spiroplasma sp. ChiS [PUUH]
1624
1549
-
Thr
TGT
[ENA]
¡û
>C151074068
CP010899
Mycoplasmatota
Spiroplasma kunkelii CR2-3x [CP010899]
992264
992189
-
Thr
TGT
-
¡û
>W121008352
AGBZ01000001
Mycoplasmatota
Spiroplasma melliferum KC3 [AGBZ]
242792
242717
-
Thr
TGT
[ENA]
¡û
>W121008369
AGBZ01000004
Mycoplasmatota
Spiroplasma melliferum KC3 [AGBZ]
274247
274322
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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