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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.253189 (17 seq.)
>C171021647
CP013197
Mycoplasmatota
Spiroplasma citri R8-A2 [CP013197]
1282924
1282849
-
Phe
GAA
-
¡û
>C171065477
CP017658
Mycoplasmatota
Spiroplasma sp. TU-14 [CP017658]
966985
966910
-
Phe
GAA
-
¡û
>C171071496
CP018022
Mycoplasmatota
Spiroplasma sp. NBRC 100390 [CP018022]
966967
966892
-
Phe
GAA
-
¡û
>W131038846
AMGI01000004
Mycoplasmatota
Spiroplasma melliferum IPMB4A [AMGI]
16012
15937
-
Phe
GAA
[ENA]
¡û
>WENV170596449
FUHO01000029
[FUHO] jellyfish metagenome; jellyfish
3698
3773
+
Phe
GAA
[ENA]
¢þ
>WENV170596531
FUHQ01000624
[FUHQ] jellyfish metagenome; jellyfish
616
541
-
Phe
GAA
[ENA]
¢þ
>C181195173
CP031088
Mycoplasmatota
Spiroplasma phoeniceum P40 [CP031088]
1443366
1443291
-
Phe
GAA
-
¡û
>C191063205
CP029202
Mycoplasmatota
Spiroplasma melliferum AS576 [CP029202]
1036622
1036547
-
Phe
GAA
-
¡û
>W1810085664
PETF01000001
Mycoplasmatota
Spiroplasma poulsonii MSRO-SE [PETF]
63164
63089
-
Phe
GAA
[ENA]
¡û
>W1810085695
PETG01000003
Mycoplasmatota
Spiroplasma poulsonii MSRO-H99 [PETG]
187458
187383
-
Phe
GAA
[ENA]
¡û
>W1810120002
PHSJ01000010
Mycoplasmatota
Spiroplasma melliferum CH-1 [PHSJ]
47507
47582
+
Phe
GAA
[ENA]
¡û
>W1810339342
PUUH01000257
Mycoplasmatota
Spiroplasma sp. ChiS [PUUH]
3255
3180
-
Phe
GAA
[ENA]
¡û
>C151074055
CP010899
Mycoplasmatota
Spiroplasma kunkelii CR2-3x [CP010899]
340743
340818
+
Phe
GAA
-
¡û
>W1511404147
JTLV01000006
Mycoplasmatota
Spiroplasma poulsonii MSRO [JTLV]
119897
119822
-
Phe
GAA
[ENA]
¡û
>W121008364
AGBZ01000001
Mycoplasmatota
Spiroplasma melliferum KC3 [AGBZ]
181274
181199
-
Phe
GAA
[ENA]
¡û
>C131014727
CP005077
Mycoplasmatota
Spiroplasma chrysopicola DF-1 [CP005077]
842105
842030
-
Phe
GAA
[Ensembl]
¡û
>C131014760
CP005078
Mycoplasmatota
Spiroplasma syrphidicola EA-1 [CP005078]
858926
858851
-
Phe
GAA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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