This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.253279 (23 seq.)
>W131050721
AMXA01000011
Betaproteobacteria
Thauera sp. 28 [AMXA]
83093
83018
-
His
GTG
[ENA]
¡û
>W131050764
AMXB01000006
Betaproteobacteria
Thauera sp. 27 [AMXB]
127359
127284
-
His
GTG
[ENA]
¡û
>W1711326607
MBFM01000003
Betaproteobacteria
Thauera phenolivorans ZV-1-C [MBFM]
445908
445983
+
His
GTG
[ENA]
¡û
>C171085194
CP018839
Betaproteobacteria
Thauera chlorobenzoica 3CB1 [CP018839]
2383295
2383220
-
His
GTG
-
¡û
>WENV180285957
OBID01854732
[OBID] metagenome; sludge
122
47
-
His
GTG
[ENA]
¢þ
>WENV170560985
CZCA01001741
[CZCA] anaerobic digester metagenome; anaerobic digester
4044
3969
-
His
GTG
[ENA]
¢þ
>WENV170649596
JRYC01031338
[JRYC] activated sludge metagenome; activated biomass of a common effluent treatment plant treating industrial wastewater
1437
1362
-
His
GTG
[ENA]
¢þ
>WENV170650165
JRYD01017488
[JRYD] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 2 ppm DO
948
1023
+
His
GTG
[ENA]
¢þ
>WENV170650760
JRYE01016617
[JRYE] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 4 ppm DO
1642
1717
+
His
GTG
[ENA]
¢þ
>WENV170652579
JRYH01007115
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
1349
1424
+
His
GTG
[ENA]
¢þ
>WENV170653136
JRYI01006043
[JRYI] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 1 ppm DO
887
962
+
His
GTG
[ENA]
¢þ
>WENV170654716
JRYL01008245
[JRYL] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater from different
2047
1972
-
His
GTG
[ENA]
¢þ
>C181042985
CP020026
Betaproteobacteria
Rhodocyclaceae bacterium Thauera-like [CP020026]
1221031
1221106
+
His
GTG
-
¡û
>C181060443
CP022187
Betaproteobacteria
Parazoarcus communis TSPY31 [CP022187]
1491171
1491096
-
His
GTG
-
¡û
>C181060486
CP022188
Betaproteobacteria
Parazoarcus communis TSNA42 [CP022188]
4261575
4261500
-
His
GTG
-
¡û
>C181164203
CP028339
Betaproteobacteria
Thauera aromatica K172 [CP028339]
1440680
1440605
-
His
GTG
-
¡û
>C181165147
CP028425
Betaproteobacteria
Zoogloeaceae bacteirum Par-f-2 [CP028425]
1126492
1126567
+
His
GTG
-
¡û
>C181176819
CP029331
Betaproteobacteria
Thauera hydrothermalis GD-2 [CP029331]
1861531
1861456
-
His
GTG
-
¡û
>C191022910
CP022958
Betaproteobacteria
Azoarcus sp. DD4 [CP022958]
2923181
2923106
-
His
GTG
-
¡û
>W1810444884
PZKC01000001
Betaproteobacteria
Pseudothauera lacus D20 [PZKC]
375883
375808
-
His
GTG
[ENA]
¡û
>W1810679165
QKOE01000007
Betaproteobacteria
Parazoarcus communis SWub3 [QKOE]
117733
117808
+
His
GTG
[ENA]
¡û
>W1611063343
MBFM01000003
Betaproteobacteria
Thauera phenolivorans ZV-1-C [MBFM]
445908
445983
+
His
GTG
[ENA]
¡û
>W1710539440
FNVJ01000001
Betaproteobacteria
Thauera chlorobenzoica [FNVJ]
286397
286472
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK