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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.253284 (12 seq.)
>W1711326641
MBFM01000006
Betaproteobacteria
Thauera phenolivorans ZV-1-C [MBFM]
22215
22290
+
Lys
CTT
[ENA]
¡û
>W131174774
ARIS01000074
Betaproteobacteria
Thiomonas sp. FB-6 [ARIS]
65542
65467
-
Lys
CTT
[ENA]
¡û
>C001340
CR555306
Betaproteobacteria
Aromatoleum aromaticum EbN1 [CR555306]
1583319
1583394
+
Lys
CTT
[Ensembl]
¡û
>WENV170653205
JRYI01016349
[JRYI] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 1 ppm DO
2374
2449
+
Lys
CTT
[ENA]
¢þ
>WENV170661596
JXWV01065937
[JXWV] soil metagenome; rice field; organic FYM Plot
81
156
+
Lys
CTT
[ENA]
¢þ
>WENV170713624
LNFM01036440
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
2602
2677
+
Lys
CTT
[ENA]
¢þ
>C181060420
CP022187
Betaproteobacteria
Parazoarcus communis TSPY31 [CP022187]
4311569
4311494
-
Lys
CTT
-
¡û
>C181060494
CP022188
Betaproteobacteria
Parazoarcus communis TSNA42 [CP022188]
2509596
2509521
-
Lys
CTT
-
¡û
>C181081467
CP023439
Betaproteobacteria
Thauera sp. K11 [CP023439]
4981122
4981047
-
Lys
CTT
-
¡û
>C191022923
CP022958
Betaproteobacteria
Azoarcus sp. DD4 [CP022958]
777339
777264
-
Lys
CTT
-
¡û
>W1910699996
MESC01000085
Betaproteobacteria
Burkholderiales bacterium RIFCSPHIGHO2_12_FULL_67_38 [MESC]
13771
13696
-
Lys
CTT
[ENA]
¡û
>W1611063377
MBFM01000006
Betaproteobacteria
Thauera phenolivorans ZV-1-C [MBFM]
22215
22290
+
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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