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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.253608 (31 seq.)
>W1710933153
LOIP01000056
Gammaproteobacteria
Escherichia coli [LOIP]
135838
135763
-
Thr
TGT
[ENA]
¡û
>W1711048546
LRPS01000085
Gammaproteobacteria
Citrobacter koseri [LRPS]
82397
82322
-
Thr
TGT
[ENA]
¡û
>W1711048596
LRPT01000086
Gammaproteobacteria
Citrobacter koseri [LRPT]
90146
90221
+
Thr
TGT
[ENA]
¡û
>W1711066393
LSCU01000051
Gammaproteobacteria
Citrobacter koseri [LSCU]
7377
7452
+
Thr
TGT
[ENA]
¡û
>W1711115506
LUAG01000045
Gammaproteobacteria
Salmonella sp. HMSC13B08 [LUAG]
10620
10545
-
Thr
TGT
[ENA]
¡û
>WENV180136095
OATL01005806
[OATL] human gut metagenome; faeces
22
97
+
Thr
TGT
[ENA]
¢þ
>PHG181003830
KY271399
Siphoviridae
Klebsiella phage 5 LV-2017 (KY271399)
20623
20698
+
Thr
TGT
[ENA]
¡û
>C181057067
CP022073
Gammaproteobacteria
Citrobacter koseri FDAARGOS_287 [CP022073]
3772621
3772696
+
Thr
TGT
-
¡û
>C181083736
CP023527
Gammaproteobacteria
Citrobacter koseri FDAARGOS_393 [CP023527]
2475462
2475387
-
Thr
TGT
-
¡û
>C181129772
CP026231
Gammaproteobacteria
Citrobacter freundii complex sp. CFNIH4 [CP026231]
2183853
2183778
-
Thr
TGT
-
¡û
>C181138327
CP026709
Gammaproteobacteria
Citrobacter koseri AR_0024 [CP026709]
2983055
2982980
-
Thr
TGT
-
¡û
>C191202307
LR134240
Gammaproteobacteria
Escherichia coli NCTC9107 [LR134240]
2648337
2648262
-
Thr
TGT
-
¡û
>W1910116664
BGEZ01000047
Gammaproteobacteria
Escherichia coli OU-NP007 [BGEZ]
117210
117285
+
Thr
TGT
[ENA]
¡û
>W1910134261
BIBQ01000061
Gammaproteobacteria
Escherichia coli 103-L154-A [BIBQ]
72765
72840
+
Thr
TGT
[ENA]
¡û
>W1910135776
BICK01000018
Gammaproteobacteria
Escherichia coli 27-C97-A [BICK]
818467
818392
-
Thr
TGT
[ENA]
¡û
>W1910135825
BICL01000015
Gammaproteobacteria
Escherichia coli 28-C100-A [BICL]
127354
127429
+
Thr
TGT
[ENA]
¡û
>W1910139353
BIEG01000016
Gammaproteobacteria
Escherichia coli 76-A58-A [BIEG]
112116
112191
+
Thr
TGT
[ENA]
¡û
>W1910139430
BIEH01000003
Gammaproteobacteria
Escherichia coli 77-A77-A [BIEH]
51053
51128
+
Thr
TGT
[ENA]
¡û
>W1910895335
NFTU01000003
Gammaproteobacteria
Escherichia coli CVAST2484 [NFTU]
59742
59817
+
Thr
TGT
[ENA]
¡û
>W1911153121
NPHT01000033
Gammaproteobacteria
Klebsiella oxytoca K3678 [NPHT]
25061
25136
+
Thr
TGT
[ENA]
¡û
>W1911620546
PQLF01000001
Gammaproteobacteria
Citrobacter freundii complex sp. CFNIH7 [PQLF]
348753
348828
+
Thr
TGT
[ENA]
¡û
>W1911620667
PQLG01000018
Gammaproteobacteria
Citrobacter freundii complex sp. CFNIH6 [PQLG]
39800
39725
-
Thr
TGT
[ENA]
¡û
>W1810324937
PUDZ01000002
Gammaproteobacteria
Escherichia coli YH17131 [PUDZ]
75687
75762
+
Thr
TGT
[ENA]
¡û
>C161002470
AP014951
Gammaproteobacteria
Klebsiella oxytoca JKo3 [AP014951]
4168926
4168851
-
Thr
TGT
-
¡û
>W1610492997
FLFR01000017
Gammaproteobacteria
Klebsiella quasipneumoniae pneumoniae [FLFR]
65742
65667
-
Thr
TGT
[ENA]
¡û
>W1610512122
FLXD01000001
Gammaproteobacteria
Klebsiella quasipneumoniae PB509 [FLXD]
519381
519456
+
Thr
TGT
[ENA]
¡û
>W1610790684
LOIP01000056
Gammaproteobacteria
Escherichia coli [LOIP]
135838
135763
-
Thr
TGT
[ENA]
¡û
>W1610889675
LRPS01000085
Gammaproteobacteria
Citrobacter koseri [LRPS]
82397
82322
-
Thr
TGT
[ENA]
¡û
>W1610889725
LRPT01000086
Gammaproteobacteria
Citrobacter koseri [LRPT]
90146
90221
+
Thr
TGT
[ENA]
¡û
>W1610906963
LSCU01000051
Gammaproteobacteria
Citrobacter koseri [LSCU]
7377
7452
+
Thr
TGT
[ENA]
¡û
>W1710486467
FLFR01000017
Gammaproteobacteria
Klebsiella quasipneumoniae pneumoniae [FLFR]
65742
65667
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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