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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.253646 (20 seq.)
>W131182119
ARQC01000177
Rhodothermota
Salinibacter sp. J07SB67 [ARQC]
1298
1373
+
Phe
GAA
[ENA]
¡û
>W131213781
ATTH01000001
Rhodothermota
Salisaeta longa DSM 21114 [ATTH]
1329444
1329519
+
Phe
GAA
[ENA]
¡û
>C024111
CP000159
Rhodothermota
Salinibacter ruber DSM 13855 [CP000159]
2003871
2003946
+
Phe
GAA
[Ensembl]
¡û
>WENV170008836
APHM01009297
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
1298
1373
+
Phe
GAA
[ENA]
¢þ
>C181192100
CP030716
Rhodothermota
Salinibacter ruber P13 [CP030716]
2011383
2011457
+
Phe
GAA
-
¡û
>C191072364
CP030356
Rhodothermota
Salinibacter ruber P18 [CP030356]
1990648
1990721
+
Phe
GAA
-
¡û
>C191072408
CP030357
Rhodothermota
Salinibacter ruber SP38 [CP030357]
1995718
1995792
+
Phe
GAA
-
¡û
>C191072454
CP030361
Rhodothermota
Salinibacter ruber SP73 [CP030361]
2095223
2095297
+
Phe
GAA
-
¡û
>C191072498
CP030364
Rhodothermota
Salinibacter ruber M1 [CP030364]
1994532
1994606
+
Phe
GAA
-
¡û
>C191072543
CP030369
Rhodothermota
Salinibacter ruber RM158 [CP030369]
2056118
2056192
+
Phe
GAA
-
¡û
>W1910870062
NCQX01000064
Rhodothermota
Salinibacter ruber SP273 [NCQX]
9226
9300
+
Phe
GAA
[ENA]
¡û
>W1910870106
NCQY01000030
Rhodothermota
Salinibacter altiplanensis AN15 [NCQY]
309128
309201
+
Phe
GAA
[ENA]
¡û
>W1910870159
NCQZ01000051
Rhodothermota
Salinibacter altiplanensis LL19 [NCQZ]
237202
237129
-
Phe
GAA
[ENA]
¡û
>W1910870197
NCRA01000033
Rhodothermota
Salinibacter altiplanensis AN4 [NCRA]
29557
29630
+
Phe
GAA
[ENA]
¡û
>W1910870229
NCRB01000027
Rhodothermota
Salinivenus iranica CB7 [NCRB]
7779
7853
+
Phe
GAA
[ENA]
¡û
>W1910870253
NCRC01000002
Rhodothermota
Salinivenus lutea DBO [NCRC]
148744
148818
+
Phe
GAA
[ENA]
¡û
>W1810053828
PDEP01000007
Rhodothermota
Longimonas halophila KCTC 42399 [PDEP]
8477
8404
-
Phe
GAA
[ENA]
¡û
>W1810053850
PDEQ01000001
Rhodothermota
Longibacter salinarum KCTC 52045 [PDEQ]
732229
732302
+
Phe
GAA
[ENA]
¡û
>W1810053851
PDEQ01000001
Rhodothermota
Longibacter salinarum KCTC 52045 [PDEQ]
732524
732597
+
Phe
GAA
[ENA]
¡û
>C131018230
FP565814
Rhodothermota
Salinibacter ruber M8 [FP565814]
2067262
2067337
+
Phe
GAA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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