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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.253649 (17 seq.)
>W131182125
ARQC01000498
Rhodothermota
Salinibacter sp. J07SB67 [ARQC]
153
78
-
Gln
CTG
[ENA]
¡û
>C024125
CP000159
Rhodothermota
Salinibacter ruber DSM 13855 [CP000159]
2865779
2865704
-
Gln
CTG
[Ensembl]
¡û
>WENV170008792
APHM01006085
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
151
76
-
Gln
CTG
[ENA]
¢þ
>C181192114
CP030716
Rhodothermota
Salinibacter ruber P13 [CP030716]
2909190
2909116
-
Gln
CTG
-
¡û
>C191072378
CP030356
Rhodothermota
Salinibacter ruber P18 [CP030356]
3082930
3082856
-
Gln
CTG
-
¡û
>C191072422
CP030357
Rhodothermota
Salinibacter ruber SP38 [CP030357]
2901833
2901759
-
Gln
CTG
-
¡û
>C191072468
CP030361
Rhodothermota
Salinibacter ruber SP73 [CP030361]
2979892
2979818
-
Gln
CTG
-
¡û
>C191072512
CP030364
Rhodothermota
Salinibacter ruber M1 [CP030364]
2841006
2840932
-
Gln
CTG
-
¡û
>C191072557
CP030369
Rhodothermota
Salinibacter ruber RM158 [CP030369]
2930136
2930062
-
Gln
CTG
-
¡û
>W1910785951
MQWC01000004
Rhodothermota
Salinibacter sp. 10B [MQWC]
2331684
2331760
+
Gln
CTG
[ENA]
¡û
>W1910870034
NCQX01000006
Rhodothermota
Salinibacter ruber SP273 [NCQX]
19144
19218
+
Gln
CTG
[ENA]
¡û
>W1910870092
NCQY01000020
Rhodothermota
Salinibacter altiplanensis AN15 [NCQY]
409207
409282
+
Gln
CTG
[ENA]
¡û
>W1910870135
NCQZ01000029
Rhodothermota
Salinibacter altiplanensis LL19 [NCQZ]
24261
24336
+
Gln
CTG
[ENA]
¡û
>W1910870192
NCRA01000026
Rhodothermota
Salinibacter altiplanensis AN4 [NCRA]
3827
3902
+
Gln
CTG
[ENA]
¡û
>W1910870210
NCRB01000003
Rhodothermota
Salinivenus iranica CB7 [NCRB]
76730
76655
-
Gln
CTG
[ENA]
¡û
>W1910870261
NCRC01000005
Rhodothermota
Salinivenus lutea DBO [NCRC]
138273
138199
-
Gln
CTG
[ENA]
¡û
>C131018244
FP565814
Rhodothermota
Salinibacter ruber M8 [FP565814]
2943074
2942999
-
Gln
CTG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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