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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.253695 (79 seq.)
>W1712110528
NJIH01000006
Betaproteobacteria
Candidimonas nitroreducens [NJIH]
389251
389326
+
Lys
TTT
[ENA]
¡û
>C171008838
CP011189
Betaproteobacteria
Bordetella pertussis H729 [CP011189]
2967756
2967831
+
Lys
TTT
-
¡û
>C171009137
CP011195
Betaproteobacteria
Bordetella pertussis H806 [CP011195]
2962806
2962881
+
Lys
TTT
-
¡û
>C171010260
CP011242
Betaproteobacteria
Bordetella pertussis I975 [CP011242]
1111803
1111728
-
Lys
TTT
-
¡û
>C171011388
CP011695
Betaproteobacteria
Bordetella pertussis H437 [CP011695]
1090933
1090858
-
Lys
TTT
-
¡û
>C171012089
CP011709
Betaproteobacteria
Bordetella pertussis H864 [CP011709]
1110754
1110679
-
Lys
TTT
-
¡û
>C171012866
CP011725
Betaproteobacteria
Bordetella pertussis I263 [CP011725]
3051654
3051729
+
Lys
TTT
-
¡û
>C171013338
CP011734
Betaproteobacteria
Bordetella pertussis I375 [CP011734]
1093029
1092954
-
Lys
TTT
-
¡û
>C171013538
CP011738
Betaproteobacteria
Bordetella pertussis I386 [CP011738]
1089897
1089822
-
Lys
TTT
-
¡û
>C171015590
CP012081
Betaproteobacteria
Bordetella pertussis I351 [CP012081]
2965925
2966000
+
Lys
TTT
-
¡û
>C171015788
CP012085
Betaproteobacteria
Bordetella pertussis J010 [CP012085]
2968754
2968829
+
Lys
TTT
-
¡û
>C171020697
CP013093
Betaproteobacteria
Bordetella pertussis J194 [CP013093]
2966706
2966781
+
Lys
TTT
-
¡û
>C171028423
CP013884
Betaproteobacteria
Bordetella pertussis J093 [CP013884]
1089881
1089806
-
Lys
TTT
-
¡û
>C171029152
CP013899
Betaproteobacteria
Bordetella pertussis J162 [CP013899]
2963555
2963630
+
Lys
TTT
-
¡û
>C171119378
CP021455
Betaproteobacteria
Comamonas serinivorans DSM 26136 [CP021455]
2195910
2195835
-
Lys
TTT
-
¡û
>WENV181307942
OFIS01000051
[OFIS] sludge metagenome; sludge
111185
111110
-
Lys
TTT
[ENA]
¢þ
>WENV181311753
OFJB01010852
[OFJB] sludge metagenome; sludge
1707
1632
-
Lys
TTT
[ENA]
¢þ
>WENV181401557
OFTX01000920
[OFTX] sludge metagenome; sludge
8252
8177
-
Lys
TTT
[ENA]
¢þ
>WENV181402542
OFTY01003724
[OFTY] sludge metagenome; sludge
2254
2179
-
Lys
TTT
[ENA]
¢þ
>W141164664
AXSD02000107
Betaproteobacteria
Bordetella pertussis CHLA-15 [AXSD]
5931
5856
-
Lys
TTT
[ENA]
¡û
>W141164732
AXSF02000021
Betaproteobacteria
Bordetella pertussis STO1-CHLA-0006 [AXSF]
23757
23682
-
Lys
TTT
[ENA]
¡û
>W141165449
AXSU02000190
Betaproteobacteria
Bordetella pertussis 2250905 [AXSU]
8547
8622
+
Lys
TTT
[ENA]
¡û
>WENV183729602
PJTQ01087070
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
105
180
+
Lys
TTT
[ENA]
¢þ
>WENV183740274
PJUF01000946
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
16275
16200
-
Lys
TTT
[ENA]
¢þ
>WENV170688289
LFRM01237987
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
193
268
+
Lys
TTT
[ENA]
¢þ
>WENV170707238
LNAP01015834
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
8728
8653
-
Lys
TTT
[ENA]
¢þ
>WENV170707365
LNAP01018726
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
3666
3591
-
Lys
TTT
[ENA]
¢þ
>WENV170708078
LNAP01048597
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
19
94
+
Lys
TTT
[ENA]
¢þ
>C191023141
CP022987
Betaproteobacteria
Pollutimonas thiosulfatoxidans YE3 [CP022987]
2006094
2006019
-
Lys
TTT
-
¡û
>C191029541
CP025068
Betaproteobacteria
Bordetella parapertussis B144 [CP025068]
4023176
4023101
-
Lys
TTT
-
¡û
>C191032798
CP025356
Betaproteobacteria
Bordetella pertussis H034 [CP025356]
3051660
3051735
+
Lys
TTT
-
¡û
>C191032870
CP025357
Betaproteobacteria
Bordetella pertussis F578 [CP025357]
1079451
1079376
-
Lys
TTT
-
¡û
>C191033751
CP025375
Betaproteobacteria
Bordetella pertussis I439 [CP025375]
2966700
2966775
+
Lys
TTT
-
¡û
>C191036084
CP025525
Betaproteobacteria
Bordetella pertussis I420 [CP025525]
2969847
2969922
+
Lys
TTT
-
¡û
>C191042425
CP026431
Betaproteobacteria
Bordetella pertussis J363 [CP026431]
2971353
2971428
+
Lys
TTT
-
¡û
>C191042598
CP026434
Betaproteobacteria
Bordetella pertussis J357 [CP026434]
1028999
1028924
-
Lys
TTT
-
¡û
>C191042873
CP026440
Betaproteobacteria
Bordetella pertussis J323 [CP026440]
2967750
2967825
+
Lys
TTT
-
¡û
>C191044247
CP026467
Betaproteobacteria
Bordetella pertussis J401 [CP026467]
1090931
1090856
-
Lys
TTT
-
¡û
>C191045620
CP026624
Betaproteobacteria
Bordetella pertussis J525 [CP026624]
2966618
2966693
+
Lys
TTT
-
¡û
>W141520961
JGWF01000152
Betaproteobacteria
Bordetella pertussis H934 [JGWF]
1165
1090
-
Lys
TTT
[ENA]
¡û
>C191045945
CP026630
Betaproteobacteria
Bordetella pertussis J378 [CP026630]
1086147
1086072
-
Lys
TTT
-
¡û
>C191047200
CP026888
Betaproteobacteria
Bordetella pertussis J695 [CP026888]
2964621
2964696
+
Lys
TTT
-
¡û
>C191047519
CP026894
Betaproteobacteria
Bordetella pertussis J683 [CP026894]
1091981
1091906
-
Lys
TTT
-
¡û
>C191047797
CP026900
Betaproteobacteria
Bordetella pertussis J656 [CP026900]
2964897
2964972
+
Lys
TTT
-
¡û
>W141521246
JGWL01000036
Betaproteobacteria
Bordetella bronchiseptica 7.00E+71 [JGWL]
51803
51878
+
Lys
TTT
[ENA]
¡û
>W141521428
JGWO01000179
Betaproteobacteria
Bordetella bronchiseptica A1-7 [JGWO]
200151
200076
-
Lys
TTT
[ENA]
¡û
>W141522110
JGXC01000093
Betaproteobacteria
Bordetella bronchiseptica F4563 [JGXC]
46292
46367
+
Lys
TTT
[ENA]
¡û
>W141522786
JGXQ01000051
Betaproteobacteria
Bordetella bronchiseptica MBORD698 [JGXQ]
226252
226177
-
Lys
TTT
[ENA]
¡û
>W141523175
JGXY01000052
Betaproteobacteria
Bordetella bronchiseptica OSU095 [JGXY]
51480
51555
+
Lys
TTT
[ENA]
¡û
>C191207007
LR134329
Betaproteobacteria
Bordetella parapertussis NCTC10524 [LR134329]
310177
310102
-
Lys
TTT
-
¡û
>W141552063
JHOJ01000042
Betaproteobacteria
Bordetella bronchiseptica MO211 [JHOJ]
51235
51310
+
Lys
TTT
[ENA]
¡û
>W141729832
JNHR01000035
Betaproteobacteria
Bordetella bronchiseptica KM22 [JNHR]
104799
104724
-
Lys
TTT
[ENA]
¡û
>W1911200369
NRER01000002
Betaproteobacteria
Bordetella bronchiseptica SH03 [NRER]
259722
259647
-
Lys
TTT
[ENA]
¡û
>W1911238579
NSCW01000494
Betaproteobacteria
Bordetella pertussis VBD1 [NSCW]
1837
1912
+
Lys
TTT
[ENA]
¡û
>W1810062082
PDNV01000002
Betaproteobacteria
Pollutimonas nitritireducens JR1/69-2-13 [PDNV]
403268
403193
-
Lys
TTT
[ENA]
¡û
>W1810062143
PDNW01000016
Betaproteobacteria
Pollutimonas subterranea JR1/69-3-13 [PDNW]
53516
53441
-
Lys
TTT
[ENA]
¡û
>W1810089043
PGEK01000026
Betaproteobacteria
Castellaniella caeni CD04 [PGEK]
21573
21498
-
Lys
TTT
[ENA]
¡û
>C151101346
HG916765
Betaproteobacteria
Castellaniella defragrans 65Phen [HG916765]
3605733
3605658
-
Lys
TTT
[Ensembl]
¡û
>C151105031
LN849008
Betaproteobacteria
Bordetella pertussis D420 [LN849008]
1425816
1425741
-
Lys
TTT
[Ensembl]
¡û
>W1510536832
CSMW01000532
Betaproteobacteria
Bordetella pertussis B051 [CSMW]
370
295
-
Lys
TTT
[ENA]
¡û
>W1510536979
CSMZ01000231
Betaproteobacteria
Bordetella pertussis B062 [CSMZ]
358
283
-
Lys
TTT
[ENA]
¡û
>W1510537321
CSNG01000540
Betaproteobacteria
Bordetella pertussis B153 [CSNG]
1853
1928
+
Lys
TTT
[ENA]
¡û
>W1510538666
CSOI01000502
Betaproteobacteria
Bordetella pertussis B117 [CSOI]
1739
1814
+
Lys
TTT
[ENA]
¡û
>W1510538789
CSOL01000209
Betaproteobacteria
Bordetella pertussis B310 [CSOL]
6230
6305
+
Lys
TTT
[ENA]
¡û
>W1510540983
CSQE01000214
Betaproteobacteria
Bordetella pertussis B339 [CSQE]
5533
5608
+
Lys
TTT
[ENA]
¡û
>W1510543086
CSRW01000483
Betaproteobacteria
Bordetella pertussis B330 [CSRW]
341
266
-
Lys
TTT
[ENA]
¡û
>W1510543891
CSSN01000222
Betaproteobacteria
Bordetella pertussis B102 [CSSN]
5643
5718
+
Lys
TTT
[ENA]
¡û
>C11118182
CP002663
Betaproteobacteria
Pusillimonas sp. T7-7 [CP002663]
36875
36950
+
Lys
TTT
[Ensembl]
¡û
>W11119327
ADKU01000091
Betaproteobacteria
Bordetella pertussis B1834 [ADKU]
304
229
-
Lys
TTT
[ENA]
¡û
>W11119391
ADKV01000580
Betaproteobacteria
Bordetella pertussis B1917 [ADKV]
300
225
-
Lys
TTT
[ENA]
¡û
>C161024232
CP010263
Betaproteobacteria
Bordetella pertussis I646 [CP010263]
2965670
2965745
+
Lys
TTT
-
¡û
>C161024355
CP010265
Betaproteobacteria
Bordetella pertussis I669 [CP010265]
1090049
1089974
-
Lys
TTT
-
¡û
>C161028950
CP010840
Betaproteobacteria
Bordetella pertussis H379 [CP010840]
1090929
1090854
-
Lys
TTT
-
¡û
>C161035792
CP011447
Betaproteobacteria
Bordetella pertussis B3913 [CP011447]
2967775
2967850
+
Lys
TTT
-
¡û
>C161096210
CP016338
Betaproteobacteria
Bordetella pertussis B202 [CP016338]
2989273
2989348
+
Lys
TTT
-
¡û
>W1610074266
BCWN01000016
Betaproteobacteria
Castellaniella caeni NBRC 101664 [BCWN]
21485
21410
-
Lys
TTT
[ENA]
¡û
>C131020065
HE965806
Betaproteobacteria
Bordetella bronchiseptica 253 [HE965806]
4571714
4571789
+
Lys
TTT
[Ensembl]
¡û
>W1710071384
BCWN01000016
Betaproteobacteria
Castellaniella caeni NBRC 101664 [BCWN]
21485
21410
-
Lys
TTT
[ENA]
¡û
>W1710586406
FQXE01000006
Betaproteobacteria
Pollutimonas bauzanensis [FQXE]
13188
13263
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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