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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.253739 (77 seq.)
>W1711190845
LWSF01000009
Actinomycetota
Amycolatopsis sp. M39 [LWSF]
11122
11195
+
Met
CAT
[ENA]
¡û
>W1711261868
LYXF01000017
Actinomycetota
Micromonospora sp. II [LYXF]
81403
81476
+
Met
CAT
[ENA]
¡û
>W1711388668
MEIA01000015
Actinomycetota
Couchioplanes caeruleus subsp. caeruleus [MEIA]
25522
25595
+
Met
CAT
[ENA]
¡û
>W1711749266
MUMJ01000227
Actinomycetota
Amycolatopsis lexingtonensis [MUMJ]
28766
28693
-
Met
CAT
[ENA]
¡û
>W1711749320
MUMK01000107
Actinomycetota
Amycolatopsis pretoriensis [MUMK]
52523
52450
-
Met
CAT
[ENA]
¡û
>W131091943
AOHO01000048
Actinomycetota
Amycolatopsis decaplanina DSM 44594 [AOHO]
602479
602552
+
Met
CAT
[ENA]
¡û
>W131169292
AREQ01000005
Actinomycetota
Salinispora arenicola CNT849 [AREQ]
329099
329026
-
Met
CAT
[ENA]
¡û
>W131171530
ARGG01000059
Actinomycetota
Salinispora fenicalii CNR942 [ARGG]
414196
414123
-
Met
CAT
[ENA]
¡û
>W131171726
ARGK01000118
Actinomycetota
Salinispora pacifica CNS996 [ARGK]
301652
301579
-
Met
CAT
[ENA]
¡û
>W131173019
ARHI01000098
Actinomycetota
Salinispora pacifica CNQ768 [ARHI]
439538
439465
-
Met
CAT
[ENA]
¡û
>W131173211
ARHM01000066
Actinomycetota
Salinispora arenicola CNY237 [ARHM]
38339
38412
+
Met
CAT
[ENA]
¡û
>W131177478
ARKU01000055
Actinomycetota
Salinispora arenicola CNY234 [ARKU]
307313
307240
-
Met
CAT
[ENA]
¡û
>W131191611
ASJB01000071
Actinomycetota
Amycolatopsis orientalis DSM 40040 = KCTC 9412 [ASJB]
57510
57583
+
Met
CAT
[ENA]
¡û
>W131202828
ASXH01000017
Actinomycetota
Amycolatopsis orientalis DSM 46075 [ASXH]
61390
61317
-
Met
CAT
[ENA]
¡û
>W141000353
ACQP01000294
Actinomycetota
Kutzneria sp. 744 [ACQP]
1589
1662
+
Met
CAT
[ENA]
¡û
>WENV180023917
FTIF01003880
[FTIF] metagenome; soil
1896
1823
-
Met
CAT
[ENA]
¢þ
>W141218007
AZVZ01000001
Actinomycetota
Salinispora pacifica CNT131 [AZVZ]
12289
12362
+
Met
CAT
[ENA]
¡û
>W141218359
AZWG01000003
Actinomycetota
Salinispora arenicola CNT850 [AZWG]
309206
309133
-
Met
CAT
[ENA]
¡û
>W141218723
AZWN01000008
Actinomycetota
Salinispora pacifica CNR894 [AZWN]
162901
162828
-
Met
CAT
[ENA]
¡û
>W141242283
CAIE01000041
Actinomycetota
Micromonospora lupini str. Lupac 08 [CAIE]
70667
70594
-
Met
CAT
[ENA]
¡û
>WENV183748862
PPFU01090373
[PPFU] hypolithon metagenome; Antarctic Hypolithon
1547
1474
-
Met
CAT
[ENA]
¢þ
>C181016769
CP015163
Actinomycetota
Amycolatopsis albispora WP1 [CP015163]
7150318
7150391
+
Met
CAT
-
¡û
>C181162572
CP028158
Actinomycetota
Plantactinospora sp. BC1 [CP028158]
6066774
6066701
-
Met
CAT
-
¡û
>C191007394
AP019371
Actinomycetota
Actinoplanes sp. OR16 [AP019371]
2887533
2887606
+
Met
CAT
-
¡û
>C191026469
CP023865
Actinomycetota
Actinoplanes teichomyceticus ATCC 31121 [CP023865]
624645
624718
+
Met
CAT
-
¡û
>C191026816
CP024087
Actinomycetota
Micromonospora tulbaghiae CNY-010 [CP024087]
6364610
6364683
+
Met
CAT
-
¡û
>C191130625
CP034766
Actinomycetota
Rhodococcus sp. X156 [CP034766]
3054122
3054045
-
Met
CAT
-
¡û
>W141712021
JMQG01000077
Actinomycetota
Amycolatopsis mediterranei [JMQG]
161377
161450
+
Met
CAT
[ENA]
¡û
>W141712171
JMQJ01000045
Actinomycetota
Amycolatopsis mediterranei [JMQJ]
178398
178325
-
Met
CAT
[ENA]
¡û
>W141734604
JNLS01000013
Actinomycetota
Salinispora arenicola [JNLS]
39113
39186
+
Met
CAT
[ENA]
¡û
>W141757985
JNYH01000660
Actinomycetota
Kutzneria albida [JNYH]
2391
2318
-
Met
CAT
[ENA]
¡û
>W141758052
JNYJ01000004
Actinomycetota
Dactylosporangium aurantiacum [JNYJ]
257794
257721
-
Met
CAT
[ENA]
¡û
>W141806113
JPLW01000001
Actinomycetota
Amycolatopsis sp. MJM2582 [JPLW]
617147
617074
-
Met
CAT
[ENA]
¡û
>W1910812666
MVFD01000002
Actinomycetota
Amycolatopsis sp. BJA-103 [MVFD]
1004032
1004105
+
Met
CAT
[ENA]
¡û
>W1910900987
NGNT01000004
Actinomycetota
Micromonospora echinospora ATCC 15837 [NGNT]
67255
67328
+
Met
CAT
[ENA]
¡û
>W1911492544
OBDY01000012
Actinomycetota
Actinoplanes atraurantiacus CGMCC 4.6857 [OBDY]
203144
203071
-
Met
CAT
[ENA]
¡û
>W1911675700
QGGF01000239
Actinomycetota
Micromonospora globispora S2901 [QGGF]
5771
5698
-
Met
CAT
[ENA]
¡û
>W1911676338
QGTA01000174
Actinomycetota
Micromonospora chalcea LB41 [QGTA]
20259
20332
+
Met
CAT
[ENA]
¡û
>W1911676633
QHHU01000002
Actinomycetota
Amycolatopsis balhimycina DSM 5908 [QHHU]
131861
131934
+
Met
CAT
[ENA]
¡û
>W1911678691
QHJI01000008
Actinomycetota
Amycolatopsis sp. WAC 04169 [QHJI]
71238
71311
+
Met
CAT
[ENA]
¡û
>W1911678780
QHJK01000001
Actinomycetota
Amycolatopsis sp. WAC 04197 [QHJK]
802418
802491
+
Met
CAT
[ENA]
¡û
>W1911766756
QXEC01000009
Actinomycetota
Micromonospora radicis AZ1-13 [QXEC]
205474
205401
-
Met
CAT
[ENA]
¡û
>W1810173737
PJNG01000001
Actinomycetota
Micromonospora sp. CNZ309 [PJNG]
4333193
4333120
-
Met
CAT
[ENA]
¡û
>W1810223868
POTX01000112
Actinomycetota
Micromonospora endophytica DSM 45430 [POTX]
4198
4125
-
Met
CAT
[ENA]
¡û
>W1810223923
POTY01000079
Actinomycetota
Micromonospora craterilacus NA12 [POTY]
15860
15787
-
Met
CAT
[ENA]
¡û
>W1810224122
POUB01000091
Actinomycetota
Micromonospora deserti 13K206 [POUB]
6092
6165
+
Met
CAT
[ENA]
¡û
>W1810237638
PPHF01000152
Actinomycetota
Amycolatopsis sp. CA-126428 [PPHF]
8869
8942
+
Met
CAT
[ENA]
¡û
>W1810608126
QGSW01000025
Actinomycetota
Micromonospora sp. S4605 [QGSW]
16380
16307
-
Met
CAT
[ENA]
¡û
>W1810884472
QUMQ01000001
Actinomycetota
Asanoa ferruginea DSM 44099 [QUMQ]
1373336
1373263
-
Met
CAT
[ENA]
¡û
>W1810885754
QUNO01000001
Actinomycetota
Kutzneria buriramensis DSM 45791 [QUNO]
504322
504395
+
Met
CAT
[ENA]
¡û
>C151017638
CP007155
Actinomycetota
Kutzneria albida DSM 43870 [CP007155]
9257114
9257041
-
Met
CAT
[Ensembl]
¡û
>C151018952
CP007219
Actinomycetota
Amycolatopsis lurida [CP007219]
41579
41652
+
Met
CAT
-
¡û
>W10114147
ADGV01000069
Actinomycetota
Micromonospora sp. L5 [ADGV]
16003
15930
-
Met
CAT
[ENA]
¡û
>C10100503
CP002000
Actinomycetota
Amycolatopsis mediterranei U32 [CP002000]
602442
602515
+
Met
CAT
[Ensembl]
¡û
>C11114569
CP002399
Actinomycetota
Micromonospora sp. L5 [CP002399]
650564
650491
-
Met
CAT
[Ensembl]
¡û
>W11117483
ADGV01000069
Actinomycetota
Micromonospora sp. L5 [ADGV]
16003
15930
-
Met
CAT
[ENA]
¡û
>W1610052623
BBIB01000599
Actinomycetota
Catenuloplanes nepalensis JCM 9536 [BBIB]
585
512
-
Met
CAT
[ENA]
¡û
>W1610054791
BBVA01000003
Actinomycetota
Micromonospora sp. NBRC 110037 [BBVA]
161201
161128
-
Met
CAT
[ENA]
¡û
>C131003613
CP003410
Actinomycetota
Amycolatopsis keratiniphila HCCB10007 [CP003410]
632320
632393
+
Met
CAT
[Ensembl]
¡û
>C131015952
CP005929
Actinomycetota
Actinoplanes sp. N902-109 [CP005929]
996339
996412
+
Met
CAT
[Ensembl]
¡û
>W1610745993
LMWI01000002
Actinomycetota
Micromonospora maris [LMWI]
3588080
3588007
-
Met
CAT
[ENA]
¡û
>W1610781188
LOBU01000001
Actinomycetota
Amycolatopsis regifaucium [LOBU]
86936
86863
-
Met
CAT
[ENA]
¡û
>W1610885401
LRMV01000004
Actinomycetota
Micromonospora rifamycinica [LRMV]
28573
28646
+
Met
CAT
[ENA]
¡û
>W1610992448
LWSF01000009
Actinomycetota
Amycolatopsis sp. M39 [LWSF]
11122
11195
+
Met
CAT
[ENA]
¡û
>W1710049001
BBIB01000599
Actinomycetota
Catenuloplanes nepalensis JCM 9536 [BBIB]
585
512
-
Met
CAT
[ENA]
¡û
>W1710051490
BBVA01000003
Actinomycetota
Micromonospora sp. NBRC 110037 [BBVA]
161201
161128
-
Met
CAT
[ENA]
¡û
>W1710503026
FMCW01000004
Actinomycetota
Micromonospora haikouensis [FMCW]
149959
149886
-
Met
CAT
[ENA]
¡û
>W1710503619
FMDN01000001
Actinomycetota
Micromonospora halophytica [FMDN]
413749
413676
-
Met
CAT
[ENA]
¡û
>W1710504137
FMHT01000003
Actinomycetota
Micromonospora nigra [FMHT]
2187580
2187507
-
Met
CAT
[ENA]
¡û
>W1710504259
FMHV01000002
Actinomycetota
Micromonospora rhizosphaerae [FMHV]
127260
127187
-
Met
CAT
[ENA]
¡û
>W1710504425
FMHY01000002
Actinomycetota
Micromonospora eburnea [FMHY]
6456961
6456888
-
Met
CAT
[ENA]
¡û
>W1710504452
FMHZ01000002
Actinomycetota
Micromonospora citrea [FMHZ]
4261373
4261446
+
Met
CAT
[ENA]
¡û
>W1710504562
FMIB01000002
Actinomycetota
Micromonospora chersina [FMIB]
5018696
5018769
+
Met
CAT
[ENA]
¡û
>W1710561020
FONV01000010
Actinomycetota
Actinoplanes philippinensis [FONV]
341484
341411
-
Met
CAT
[ENA]
¡û
>W1710580397
FPJG01000006
Actinomycetota
Amycolatopsis australiensis [FPJG]
410877
410804
-
Met
CAT
[ENA]
¡û
>W1710592789
FRCS01000005
Actinomycetota
Cryptosporangium aurantiacum [FRCS]
561905
561830
-
Met
CAT
[ENA]
¡û
>W1710628070
JPRA01000012
Actinomycetota
Amycolatopsis mediterranei [JPRA]
10007
10080
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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