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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.253764 (93 seq.)
>W1711228137
LXWI01000017
Campylobacterota
Helicobacter pullorum [LXWI]
12820
12895
+
Thr
TGT
[ENA]
¡û
>W1711302761
MAJF01000014
Campylobacterota
Helicobacter pullorum [MAJF]
36691
36766
+
Thr
TGT
[ENA]
¡û
>W1711302791
MAJG01000003
Campylobacterota
Helicobacter pullorum [MAJG]
36946
36871
-
Thr
TGT
[ENA]
¡û
>W1711306335
MANJ01000012
Campylobacterota
Helicobacter pullorum [MANJ]
36717
36792
+
Thr
TGT
[ENA]
¡û
>W1711306361
MANK01000003
Campylobacterota
Helicobacter pullorum [MANK]
36961
36886
-
Thr
TGT
[ENA]
¡û
>W1711307550
MAOZ01000018
Campylobacterota
Helicobacter pullorum [MAOZ]
50416
50491
+
Thr
TGT
[ENA]
¡û
>W1711307575
MAPA01000020
Campylobacterota
Helicobacter pullorum [MAPA]
14261
14186
-
Thr
TGT
[ENA]
¡û
>W1711307617
MAPB01000014
Campylobacterota
Helicobacter pullorum [MAPB]
42539
42614
+
Thr
TGT
[ENA]
¡û
>W1711307645
MAPC01000013
Campylobacterota
Helicobacter pullorum [MAPC]
36960
36885
-
Thr
TGT
[ENA]
¡û
>W1711307684
MAPD01000020
Campylobacterota
Helicobacter pullorum [MAPD]
9030
9105
+
Thr
TGT
[ENA]
¡û
>W1711307711
MAPE01000003
Campylobacterota
Helicobacter pullorum [MAPE]
43010
43085
+
Thr
TGT
[ENA]
¡û
>C026892
BX571656
Campylobacterota
Wolinella succinogenes [BX571656]
453188
453263
+
Thr
TGT
[Ensembl]
¡û
>WENV181203600
OERW01004429
[OERW] metagenome; Caecal content
244
169
-
Thr
TGT
[ENA]
¢þ
>W08010290
ABQS01000049
Campylobacterota
Helicobacter canadensis MIT 98-5491 [ABQS]
15308
15236
-
Thr
TGT
[ENA]
¡û
>W08010355
ABQU01000022
Campylobacterota
Helicobacter pullorum MIT 98-5489 [ABQU]
38881
38809
-
Thr
TGT
[ENA]
¡û
>WENV183073919
OLIU01003054
[OLIU] human gut metagenome; stool sample
2805
2880
+
Thr
TGT
[ENA]
¢þ
>WENV170635949
JFBN01012145
[JFBN] chicken gut metagenome; ceca of Broiler chicken
36999
36924
-
Thr
TGT
[ENA]
¢þ
>C181054482
CP021886
Campylobacterota
Helicobacter apodemus SCJK1 [CP021886]
1650718
1650793
+
Thr
TGT
-
¡û
>W09119123
ACDN01000003
Campylobacterota
Helicobacter bilis ATCC 43879 [ACDN]
22945
22870
-
Thr
TGT
[ENA]
¡û
>W09119165
ACDO01000007
Campylobacterota
Helicobacter winghamensis ATCC BAA-430 [ACDO]
10977
10902
-
Thr
TGT
[ENA]
¡û
>W09134327
ACSF01000002
Campylobacterota
Helicobacter canadensis MIT 98-5491(ACSF) [ACSF]
142728
142803
+
Thr
TGT
[ENA]
¡û
>C191209080
LR134366
Campylobacterota
Wolinella succinogenes NCTC11488 [LR134366]
1483774
1483849
+
Thr
TGT
-
¡û
>C191213252
LR134509
Campylobacterota
Helicobacter pullorum NCTC13154 [LR134509]
1534150
1534075
-
Thr
TGT
-
¡û
>W141558672
JHWC01000007
Campylobacterota
Helicobacter rodentium ATCC 700285 [JHWC]
78092
78167
+
Thr
TGT
[ENA]
¡û
>W141701691
JMKW01000010
Campylobacterota
Helicobacter bilis ATCC 51630 [JMKW]
34029
34104
+
Thr
TGT
[ENA]
¡û
>W1910006438
AZTD01000413
Campylobacterota
Helicobacter bilis ATCC 51630 [AZTD]
142
67
-
Thr
TGT
[ENA]
¡û
>W1910546234
FZML01000017
Campylobacterota
Helicobacter muridarum [FZML]
137949
138024
+
Thr
TGT
[ENA]
¡û
>W1910546257
FZMM01000003
Campylobacterota
Helicobacter muridarum [FZMM]
119198
119273
+
Thr
TGT
[ENA]
¡û
>W1910546292
FZMN01000006
Campylobacterota
Helicobacter muridarum [FZMN]
137949
138024
+
Thr
TGT
[ENA]
¡û
>W1910546476
FZMS01000001
Campylobacterota
Helicobacter bilis [FZMS]
18239
18314
+
Thr
TGT
[ENA]
¡û
>W1910546523
FZMT01000007
Campylobacterota
Helicobacter bilis [FZMT]
98322
98397
+
Thr
TGT
[ENA]
¡û
>W1910546588
FZMV01000006
Campylobacterota
Helicobacter pullorum [FZMV]
36943
36868
-
Thr
TGT
[ENA]
¡û
>W1910546665
FZMX01000008
Campylobacterota
Helicobacter pullorum [FZMX]
35967
35892
-
Thr
TGT
[ENA]
¡û
>W1910546776
FZND01000025
Campylobacterota
Helicobacter trogontum [FZND]
75055
75130
+
Thr
TGT
[ENA]
¡û
>W1910546859
FZNF01000014
Campylobacterota
Helicobacter trogontum [FZNF]
27946
27871
-
Thr
TGT
[ENA]
¡û
>W1910546896
FZNG01000028
Campylobacterota
Helicobacter trogontum [FZNG]
29591
29666
+
Thr
TGT
[ENA]
¡û
>W1910549565
FZPJ01000006
Campylobacterota
Helicobacter mesocricetorum [FZPJ]
84139
84064
-
Thr
TGT
[ENA]
¡û
>W1910549598
FZPK01000003
Campylobacterota
Helicobacter rappini [FZPK]
74329
74404
+
Thr
TGT
[ENA]
¡û
>W1910549687
FZPM01000025
Campylobacterota
Helicobacter aurati [FZPM]
77784
77859
+
Thr
TGT
[ENA]
¡û
>W1910549728
FZPN01000011
Campylobacterota
Helicobacter canadensis [FZPN]
29002
28927
-
Thr
TGT
[ENA]
¡û
>W1910584328
JXTX01000005
Campylobacterota
Helicobacter pullorum 2013BJHL [JXTX]
41246
41171
-
Thr
TGT
[ENA]
¡û
>W1910663812
MBPH01000035
Campylobacterota
Helicobacter winghamensis 196_13 [MBPH]
77467
77542
+
Thr
TGT
[ENA]
¡û
>W1910663848
MBPI01000033
Campylobacterota
Helicobacter winghamensis 228_13 [MBPI]
77491
77566
+
Thr
TGT
[ENA]
¡û
>W1910663885
MBPJ01000041
Campylobacterota
Helicobacter winghamensis 294_13 [MBPJ]
73383
73458
+
Thr
TGT
[ENA]
¡û
>W1910663921
MBPK01000042
Campylobacterota
Helicobacter winghamensis 295_13 [MBPK]
73386
73461
+
Thr
TGT
[ENA]
¡û
>W1910663955
MBPL01000044
Campylobacterota
Helicobacter winghamensis 296_13 [MBPL]
73386
73461
+
Thr
TGT
[ENA]
¡û
>W1910756050
MLAM01000001
Campylobacterota
Helicobacter sp. 11S02596-1 [MLAM]
89503
89428
-
Thr
TGT
[ENA]
¡û
>W1910756090
MLAN01000002
Campylobacterota
Helicobacter sp. 11S02629-2 [MLAN]
180980
181055
+
Thr
TGT
[ENA]
¡û
>W1910756176
MLAP01000008
Campylobacterota
Helicobacter sp. 12S02634-8 [MLAP]
48467
48392
-
Thr
TGT
[ENA]
¡û
>W1910756197
MLAQ01000004
Campylobacterota
Helicobacter sp. 12S02232-10 [MLAQ]
159920
159995
+
Thr
TGT
[ENA]
¡û
>W1910756225
MLAR01000001
Campylobacterota
Helicobacter sp. 13S00401-1 [MLAR]
96212
96137
-
Thr
TGT
[ENA]
¡û
>W1910756257
MLAS01000001
Campylobacterota
Helicobacter sp. 13S00477-4 [MLAS]
266094
266019
-
Thr
TGT
[ENA]
¡û
>W1910852889
NBIU01000003
Campylobacterota
Helicobacter valdiviensis WBE14 [NBIU]
67191
67266
+
Thr
TGT
[ENA]
¡û
>W1910914951
NHYL01000001
Campylobacterota
Helicobacter sp. 11-8110 [NHYL]
558058
558133
+
Thr
TGT
[ENA]
¡û
>W1910914987
NHYM01000002
Campylobacterota
Helicobacter sp. 16-1353 [NHYM]
177423
177348
-
Thr
TGT
[ENA]
¡û
>W1910915040
NHYN01000008
Campylobacterota
Helicobacter sp. 15-1451 [NHYN]
17059
16984
-
Thr
TGT
[ENA]
¡û
>W1911770842
QXJG01000004
Campylobacterota
Helicobacter burdigaliensis CNRCH 2005/566H [QXJG]
51330
51405
+
Thr
TGT
[ENA]
¡û
>W1810046481
NXLO01000003
Campylobacterota
Helicobacter sp. MIT 99-5507 [NXLO]
179478
179403
-
Thr
TGT
[ENA]
¡û
>W1810046534
NXLP01000034
Campylobacterota
Helicobacter sp. MIT 14-3879 [NXLP]
14487
14412
-
Thr
TGT
[ENA]
¡û
>W1810046552
NXLQ01000003
Campylobacterota
Helicobacter didelphidarum MIT 17-337 [NXLQ]
155582
155507
-
Thr
TGT
[ENA]
¡û
>W1810046639
NXLS01000008
Campylobacterota
Helicobacter ganmani MIT 99-5101 [NXLS]
36229
36154
-
Thr
TGT
[ENA]
¡û
>W1810046768
NXLW01000006
Campylobacterota
Helicobacter aurati MIT 97-5075 [NXLW]
73333
73408
+
Thr
TGT
[ENA]
¡û
>C10107579
FN555004
Campylobacterota
Helicobacter mustelae 12198 [FN555004]
370527
370602
+
Thr
TGT
[Ensembl]
¡û
>W1511353171
JRPA01000144
Campylobacterota
Helicobacter sp. MIT 05-5294 [JRPA]
404
329
-
Thr
TGT
[ENA]
¡û
>W1511353221
JRPB01000007
Campylobacterota
Helicobacter sp. MIT 11-5569 [JRPB]
2010
1935
-
Thr
TGT
[ENA]
¡û
>W1511353243
JRPC01000040
Campylobacterota
Helicobacter apodemus MIT-03-7007 [JRPC]
11005
11080
+
Thr
TGT
[ENA]
¡û
>W1511353286
JRPD01000001
Campylobacterota
Helicobacter muridarum ST1 [JRPD]
567096
567171
+
Thr
TGT
[ENA]
¡û
>W1511353308
JRPD01000004
Campylobacterota
Helicobacter muridarum ST1 [JRPD]
51248
51173
-
Thr
TGT
[ENA]
¡û
>W1511353395
JRPG01000005
Campylobacterota
Helicobacter bilis ATCC 51630 [JRPG]
24536
24461
-
Thr
TGT
[ENA]
¡û
>W1511353428
JRPH01000001
Campylobacterota
Helicobacter bilis Missouri [JRPH]
455942
456017
+
Thr
TGT
[ENA]
¡û
>W1511353521
JRPJ01000002
Campylobacterota
Helicobacter bilis ATCC 49320 [JRPJ]
342246
342171
-
Thr
TGT
[ENA]
¡û
>W1511353545
JRPK01000082
Campylobacterota
Helicobacter trogontum ATCC 49310 [JRPK]
12656
12731
+
Thr
TGT
[ENA]
¡û
>W1511353564
JRPL01000001
Campylobacterota
Helicobacter trogontum ATCC 700114 [JRPL]
1083247
1083322
+
Thr
TGT
[ENA]
¡û
>C161097594
CP016503
Campylobacterota
Helicobacter enhydrae MIT 01-6242 [CP016503]
934550
934475
-
Thr
TGT
[Ensembl]
¡û
>W1610522062
JNOA01000019
Campylobacterota
Helicobacter pullorum [JNOA]
36903
36828
-
Thr
TGT
[ENA]
¡û
>W1610522097
JNOB01000018
Campylobacterota
Helicobacter pullorum [JNOB]
37011
36936
-
Thr
TGT
[ENA]
¡û
>W1610522132
JNOC01000029
Campylobacterota
Helicobacter pullorum [JNOC]
36959
36884
-
Thr
TGT
[ENA]
¡û
>W1610522220
JNUR01000014
Campylobacterota
Helicobacter pullorum [JNUR]
36950
36875
-
Thr
TGT
[ENA]
¡û
>W1611012054
LXWI01000017
Campylobacterota
Helicobacter pullorum [LXWI]
12820
12895
+
Thr
TGT
[ENA]
¡û
>W1611053086
MAJF01000014
Campylobacterota
Helicobacter pullorum [MAJF]
36691
36766
+
Thr
TGT
[ENA]
¡û
>W1611053116
MAJG01000003
Campylobacterota
Helicobacter pullorum [MAJG]
36946
36871
-
Thr
TGT
[ENA]
¡û
>W1611055689
MANJ01000012
Campylobacterota
Helicobacter pullorum [MANJ]
36717
36792
+
Thr
TGT
[ENA]
¡û
>W1611055715
MANK01000003
Campylobacterota
Helicobacter pullorum [MANK]
36961
36886
-
Thr
TGT
[ENA]
¡û
>W1611055833
MAOZ01000018
Campylobacterota
Helicobacter pullorum [MAOZ]
50416
50491
+
Thr
TGT
[ENA]
¡û
>W1611055858
MAPA01000020
Campylobacterota
Helicobacter pullorum [MAPA]
14261
14186
-
Thr
TGT
[ENA]
¡û
>W1611055900
MAPB01000014
Campylobacterota
Helicobacter pullorum [MAPB]
42539
42614
+
Thr
TGT
[ENA]
¡û
>W1611055928
MAPC01000013
Campylobacterota
Helicobacter pullorum [MAPC]
36960
36885
-
Thr
TGT
[ENA]
¡û
>W1611055967
MAPD01000020
Campylobacterota
Helicobacter pullorum [MAPD]
9030
9105
+
Thr
TGT
[ENA]
¡û
>W1611055994
MAPE01000003
Campylobacterota
Helicobacter pullorum [MAPE]
43010
43085
+
Thr
TGT
[ENA]
¡û
>W1710621988
JNOA01000019
Campylobacterota
Helicobacter pullorum [JNOA]
36903
36828
-
Thr
TGT
[ENA]
¡û
>W1710622023
JNOB01000018
Campylobacterota
Helicobacter pullorum [JNOB]
37011
36936
-
Thr
TGT
[ENA]
¡û
>W1710622058
JNOC01000029
Campylobacterota
Helicobacter pullorum [JNOC]
36959
36884
-
Thr
TGT
[ENA]
¡û
>W1710622146
JNUR01000014
Campylobacterota
Helicobacter pullorum [JNUR]
36950
36875
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK