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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.254300 (44 seq.)
>W1711005197
LQNF01000040
Bacillota
Oceanobacillus damuensis [LQNF]
477
402
-
Lys
TTT
[ENA]
¡û
>W1711005208
LQNF01000071
Bacillota
Oceanobacillus damuensis [LQNF]
581
506
-
Lys
TTT
[ENA]
¡û
>W1711712198
MTBQ01000002
Bacillota
Oceanobacillus rekensis [MTBQ]
1143
1218
+
Lys
TTT
[ENA]
¡û
>W1711712232
MTBQ01000006
Bacillota
Oceanobacillus rekensis [MTBQ]
3251
3327
+
Lys
TTT
[ENA]
¡û
>W1711712258
MTBQ01000012
Bacillota
Oceanobacillus rekensis [MTBQ]
552
627
+
Lys
TTT
[ENA]
¡û
>W141239564
CAER01000069
Bacillota
Oceanobacillus massiliensis Ndiop [CAER]
1062
987
-
Lys
TTT
[ENA]
¡û
>W141239576
CAER01000075
Bacillota
Oceanobacillus massiliensis Ndiop [CAER]
32672
32597
-
Lys
TTT
[ENA]
¡û
>W141239594
CAER01000088
Bacillota
Oceanobacillus massiliensis Ndiop [CAER]
367
442
+
Lys
TTT
[ENA]
¡û
>WENV170643941
JMBV01012426
[JMBV] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
274
350
+
Lys
TTT
[ENA]
¢þ
>C181106484
CP024848
Bacillota
Oceanobacillus zhaokaii 160 [CP024848]
91281
91356
+
Lys
TTT
-
¡û
>C181106500
CP024848
Bacillota
Oceanobacillus zhaokaii 160 [CP024848]
222756
222828
+
Lys
TTT
-
¡û
>C181106506
CP024848
Bacillota
Oceanobacillus zhaokaii 160 [CP024848]
621624
621699
+
Lys
TTT
-
¡û
>C181106521
CP024848
Bacillota
Oceanobacillus zhaokaii 160 [CP024848]
910230
910305
+
Lys
TTT
-
¡û
>C181106563
CP024848
Bacillota
Oceanobacillus zhaokaii 160 [CP024848]
3843633
3843558
-
Lys
TTT
-
¡û
>C181110781
CP025019
Bacillota
Oceanobacillus sp. 143 [CP025019]
91820
91895
+
Lys
TTT
-
¡û
>C181110797
CP025019
Bacillota
Oceanobacillus sp. 143 [CP025019]
223134
223206
+
Lys
TTT
-
¡û
>C181110803
CP025019
Bacillota
Oceanobacillus sp. 143 [CP025019]
621257
621332
+
Lys
TTT
-
¡û
>C181110818
CP025019
Bacillota
Oceanobacillus sp. 143 [CP025019]
909281
909356
+
Lys
TTT
-
¡û
>C181110860
CP025019
Bacillota
Oceanobacillus sp. 143 [CP025019]
3836584
3836509
-
Lys
TTT
-
¡û
>W1911146426
NPDE01000064
Bacillota
Paenibacillus sp. 7884-2 [NPDE]
474
549
+
Lys
TTT
[ENA]
¡û
>W1911146441
NPDE01000082
Bacillota
Paenibacillus sp. 7884-2 [NPDE]
491
419
-
Lys
TTT
[ENA]
¡û
>W1911748491
QWEH01000010
Bacillota
Oceanobacillus profundus DSM 18246 [QWEH]
825
750
-
Lys
TTT
[ENA]
¡û
>W1911748502
QWEH01000017
Bacillota
Oceanobacillus profundus DSM 18246 [QWEH]
6497
6572
+
Lys
TTT
[ENA]
¡û
>W1911748531
QWEH01000034
Bacillota
Oceanobacillus profundus DSM 18246 [QWEH]
437
362
-
Lys
TTT
[ENA]
¡û
>W1911748540
QWEH01000056
Bacillota
Oceanobacillus profundus DSM 18246 [QWEH]
845
770
-
Lys
TTT
[ENA]
¡û
>W1810144893
PIOC01000021
Bacillota
Oceanobacillus arenosus CAU 1183 [PIOC]
83108
83183
+
Lys
TTT
[ENA]
¡û
>W1810144909
PIOC01000028
Bacillota
Oceanobacillus arenosus CAU 1183 [PIOC]
24341
24416
+
Lys
TTT
[ENA]
¡û
>W1810144912
PIOC01000029
Bacillota
Oceanobacillus arenosus CAU 1183 [PIOC]
738
663
-
Lys
TTT
[ENA]
¡û
>W1810144927
PIOC01000032
Bacillota
Oceanobacillus arenosus CAU 1183 [PIOC]
1203
1131
-
Lys
TTT
[ENA]
¡û
>W1810144995
PIOD01000027
Bacillota
Oceanobacillus chungangensis CAU 1051 [PIOD]
125
50
-
Lys
TTT
[ENA]
¡û
>W1810145001
PIOD01000029
Bacillota
Oceanobacillus chungangensis CAU 1051 [PIOD]
82224
82299
+
Lys
TTT
[ENA]
¡û
>W1810145014
PIOD01000030
Bacillota
Oceanobacillus chungangensis CAU 1051 [PIOD]
17326
17398
+
Lys
TTT
[ENA]
¡û
>W1810679966
QKRH01000014
Bacillota
Bacilli bacterium VT-441 [QKRH]
1436
1361
-
Lys
TTT
[ENA]
¡û
>W1810679980
QKRH01000028
Bacillota
Bacilli bacterium VT-441 [QKRH]
29072
28997
-
Lys
TTT
[ENA]
¡û
>W1810679988
QKRH01000042
Bacillota
Bacilli bacterium VT-441 [QKRH]
23707
23780
+
Lys
TTT
[ENA]
¡û
>W1810680017
QKRH01000063
Bacillota
Bacilli bacterium VT-441 [QKRH]
748
820
+
Lys
TTT
[ENA]
¡û
>W1810680032
QKRH01000085
Bacillota
Bacilli bacterium VT-441 [QKRH]
1078
1003
-
Lys
TTT
[ENA]
¡û
>W1810745268
QOWG01000027
Bacillota
Bacilli bacterium VT-842 [QOWG]
29292
29217
-
Lys
TTT
[ENA]
¡û
>W1810745276
QOWG01000050
Bacillota
Bacilli bacterium VT-842 [QOWG]
1232
1159
-
Lys
TTT
[ENA]
¡û
>W1810745306
QOWG01000065
Bacillota
Bacilli bacterium VT-842 [QOWG]
1436
1361
-
Lys
TTT
[ENA]
¡û
>W1810745319
QOWG01000066
Bacillota
Bacilli bacterium VT-842 [QOWG]
748
820
+
Lys
TTT
[ENA]
¡û
>W1810745334
QOWG01000097
Bacillota
Bacilli bacterium VT-842 [QOWG]
973
898
-
Lys
TTT
[ENA]
¡û
>W1610855847
LQNF01000040
Bacillota
Oceanobacillus damuensis [LQNF]
477
402
-
Lys
TTT
[ENA]
¡û
>W1610855858
LQNF01000071
Bacillota
Oceanobacillus damuensis [LQNF]
581
506
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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