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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.254317 (32 seq.)
>W131180051
ARMW01000006
Gammaproteobacteria
Oceanimonas smirnovii ATCC BAA-899 [ARMW]
253
178
-
Val
TAC
[ENA]
¡û
>WENV170016237
AZIJ01017841
[AZIJ] marine sediment metagenome; enrichment culture of sample MGS-ElMAX(UA) from oil contaminated site at the El-Max
661
736
+
Val
TAC
[ENA]
¢þ
>WENV170657725
JTFP01012387
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
119
44
-
Val
TAC
[ENA]
¢þ
>WENV170658219
JTFP01069701
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
107
182
+
Val
TAC
[ENA]
¢þ
>WENV170658221
JTFP01069701
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
271
346
+
Val
TAC
[ENA]
¢þ
>C181012409
CP012621
Gammaproteobacteria
Zobellella denitrificans F13-1 [CP012621]
1298558
1298633
+
Val
TAC
-
¡û
>C181012412
CP012621
Gammaproteobacteria
Zobellella denitrificans F13-1 [CP012621]
1298847
1298922
+
Val
TAC
-
¡û
>C181012415
CP012621
Gammaproteobacteria
Zobellella denitrificans F13-1 [CP012621]
1299136
1299211
+
Val
TAC
-
¡û
>C181012418
CP012621
Gammaproteobacteria
Zobellella denitrificans F13-1 [CP012621]
1299439
1299514
+
Val
TAC
-
¡û
>W1910852576
NBIM01000001
Gammaproteobacteria
Oceanimonas doudoroffii ATCC 27123 [NBIM]
52
127
+
Val
TAC
[ENA]
¡û
>W1911075352
NMUO01000001
Gammaproteobacteria
Zobellella denitrificans ZD1 [NMUO]
149500
149425
-
Val
TAC
[ENA]
¡û
>W1911075355
NMUO01000001
Gammaproteobacteria
Zobellella denitrificans ZD1 [NMUO]
149211
149136
-
Val
TAC
[ENA]
¡û
>W1911075358
NMUO01000001
Gammaproteobacteria
Zobellella denitrificans ZD1 [NMUO]
148922
148847
-
Val
TAC
[ENA]
¡û
>W1911174147
NQJF01000004
Gammaproteobacteria
Oceanimonas baumannii ATCC 700832 [NQJF]
286890
286815
-
Val
TAC
[ENA]
¡û
>W1810390131
PXYG01000002
Gammaproteobacteria
Zobellella endophytica 59N8 [PXYG]
324
249
-
Val
TAC
[ENA]
¡û
>W1810390136
PXYG01000003
Gammaproteobacteria
Zobellella endophytica 59N8 [PXYG]
318969
318894
-
Val
TAC
[ENA]
¡û
>W1810390196
PXYH01000004
Gammaproteobacteria
Zobellella taiwanensis JCM 13381 [PXYH]
222951
223026
+
Val
TAC
[ENA]
¡û
>W1810390199
PXYH01000004
Gammaproteobacteria
Zobellella taiwanensis JCM 13381 [PXYH]
223241
223316
+
Val
TAC
[ENA]
¡û
>W1810390215
PXYH01000009
Gammaproteobacteria
Zobellella taiwanensis JCM 13381 [PXYH]
52
127
+
Val
TAC
[ENA]
¡û
>W1810390262
PXYH01000094
Gammaproteobacteria
Zobellella taiwanensis JCM 13381 [PXYH]
230
155
-
Val
TAC
[ENA]
¡û
>W1810390264
PXYH01000102
Gammaproteobacteria
Zobellella taiwanensis JCM 13381 [PXYH]
26
101
+
Val
TAC
[ENA]
¡û
>W1810471832
QAGM01000004
Gammaproteobacteria
Oceanimonas marisflavi 102-Na3 [QAGM]
93105
93030
-
Val
TAC
[ENA]
¡û
>W1810471835
QAGM01000004
Gammaproteobacteria
Oceanimonas marisflavi 102-Na3 [QAGM]
92820
92745
-
Val
TAC
[ENA]
¡û
>W1810471838
QAGM01000004
Gammaproteobacteria
Oceanimonas marisflavi 102-Na3 [QAGM]
92515
92440
-
Val
TAC
[ENA]
¡û
>W1810471841
QAGM01000004
Gammaproteobacteria
Oceanimonas marisflavi 102-Na3 [QAGM]
92225
92150
-
Val
TAC
[ENA]
¡û
>W1810533030
QCZE01000001
Gammaproteobacteria
Zobellella maritima 102-Py4 [QCZE]
285023
285098
+
Val
TAC
[ENA]
¡û
>W1810533033
QCZE01000001
Gammaproteobacteria
Zobellella maritima 102-Py4 [QCZE]
285302
285377
+
Val
TAC
[ENA]
¡û
>W1810533036
QCZE01000001
Gammaproteobacteria
Zobellella maritima 102-Py4 [QCZE]
285602
285677
+
Val
TAC
[ENA]
¡û
>C121007354
CP003171
Gammaproteobacteria
Oceanimonas sp. GK1 [CP003171]
2713271
2713196
-
Val
TAC
[Ensembl]
¡û
>C121007357
CP003171
Gammaproteobacteria
Oceanimonas sp. GK1 [CP003171]
2712982
2712907
-
Val
TAC
[Ensembl]
¡û
>C121007360
CP003171
Gammaproteobacteria
Oceanimonas sp. GK1 [CP003171]
2712693
2712618
-
Val
TAC
[Ensembl]
¡û
>C121007363
CP003171
Gammaproteobacteria
Oceanimonas sp. GK1 [CP003171]
2712404
2712329
-
Val
TAC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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