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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.254318 (34 seq.)
>C025227
CT978603
Cyanobacteriota
Synechococcus sp. RCC307 [CT978603]
2002202
2002274
+
Met
CAT
[Ensembl]
¡û
>w013551
AANO01000001
Cyanobacteriota
Synechococcus sp. WH 5701 [AANO]
147761
147838
+
Met
CAT
[ENA]
¡û
>C171072574
CP018091
Cyanobacteriota
Synechococcus sp. SynAce01 [CP018091]
1123249
1123324
+
Met
CAT
-
¡û
>C171128307
LT578417
Cyanobacteriota
Cyanobium sp. NIES-981 [LT578417]
1791867
1791795
-
Met
CAT
-
¡û
>WENV180114641
OAPS01027727
[OAPS] marine metagenome; sea water
569
495
-
Ile2
CAT
[ENA]
¢þ
>W08011039
ABSE01000013
Cyanobacteriota
Cyanobium sp. PCC 7001 [ABSE]
241618
241545
-
Met
CAT
[ENA]
¡û
>WENV170119101
CENJ01111788
[CENJ] marine metagenome genome assembly TARA_009_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
8431
8359
-
Met
CAT
[ENA]
¢þ
>WENV170470857
CEVG01015541
[CEVG] marine metagenome genome assembly TARA_140_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
667
595
-
Met
CAT
[ENA]
¢þ
>WENV170615648
FUWD012863819
[FUWD] metagenome; unknown
476
551
+
Met
CAT
[ENA]
¢þ
>WENV170618287
FUWD012961031
[FUWD] metagenome; unknown
431
503
+
Met
CAT
[ENA]
¢þ
>WENV170812350
MDSW01181998
[MDSW] marine metagenome; seawater
573
645
+
Met
CAT
[ENA]
¢þ
>C191165421
CP039373
Cyanobacteriota
Synechococcus sp. CB0101 [CP039373]
1807674
1807748
+
Met
CAT
-
¡û
>W1911176883
NQKW01000011
Cyanobacteriota
Synechococcus sp. 1G10 [NQKW]
29710
29638
-
Met
CAT
[ENA]
¡û
>W1911176938
NQKY01000002
Cyanobacteriota
Synechococcus sp. BO 8801 [NQKY]
223252
223324
+
Met
CAT
[ENA]
¡û
>W1911638496
PVWP01000005
Cyanobacteriota
Aphanothece minutissima minutissima CCALA 015 [PVWP]
201630
201558
-
Met
CAT
[ENA]
¡û
>W1810527206
QCQP01000011
Cyanobacteriota
Synechococcus sp. AG-450-M17 [QCQP]
1008
1080
+
Met
CAT
[ENA]
¡û
>SRA1026999
SRR035086.40161
454 Sequencing (SRP001807)
399
324
-
Met
CAT
[SRA]
>SRA1027085
SRR035086.60165
454 Sequencing (SRP001807)
40
115
+
Met
CAT
[SRA]
>SRA1027493
SRR035086.134713
454 Sequencing (SRP001807)
225
150
-
Met
CAT
[SRA]
>SRA1027984
SRR035086.231495
454 Sequencing (SRP001807)
401
326
-
Met
CAT
[SRA]
>SRA1033533
SRR035088.280460
454 Sequencing (SRP001809)
314
386
+
Met
CAT
[SRA]
>SRA1051964
SRR035098.114648
454 Sequencing (SRP001819)
63
138
+
Met
CAT
[SRA]
>SRA1052272
SRR035098.173000
454 Sequencing (SRP001819)
269
344
+
Met
CAT
[SRA]
>SRA1052509
SRR035098.217316
454 Sequencing (SRP001819)
53
128
+
Met
CAT
[SRA]
>SRA1052612
SRR035098.237211
454 Sequencing (SRP001819)
185
110
-
Met
CAT
[SRA]
>SRA1053393
SRR035098.397811
454 Sequencing (SRP001819)
209
284
+
Met
CAT
[SRA]
>SRA1053780
SRR035098.494643
454 Sequencing (SRP001819)
37
112
+
Met
CAT
[SRA]
>ENV09000974
ABSQ01006818
Freshwater sediment metagenome lwMethenol_C1
92
167
+
Met
CAT
[ENA]
¡û
>W10120560
ADXL01000087
Cyanobacteriota
Synechococcus sp. CB0101 [ADXL]
5753
5679
-
Met
CAT
[ENA]
¡û
>W11127304
ADXL01000087
Cyanobacteriota
Synechococcus sp. CB0101 [ADXL]
5753
5679
-
Met
CAT
[ENA]
¡û
>W1511508490
JXQG01000038
Cyanobacteriota
Candidatus Synechococcus spongiarum spongiarum SP3 [JXQG]
11226
11150
-
Met
CAT
[ENA]
¡û
>W1511679471
LFEK01000036
Cyanobacteriota
Synechococcus sp. GFB01 [LFEK]
6827
6752
-
Met
CAT
[ENA]
¡û
>W1610413250
FITM01000071
Cyanobacteriota
Candidatus Synechococcus spongiarum [FITM]
4714
4789
+
Met
CAT
[ENA]
¡û
>C131003922
CP003495
Cyanobacteriota
Cyanobium gracile PCC 6307 [CP003495]
2026698
2026626
-
Met
CAT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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