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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.254331 (27 seq.)
>W1710999452
LQDL01000025
Gammaproteobacteria
Pasteurella multocida [LQDL]
56657
56582
-
Ala
GGC
[ENA]
¡û
>W1710999659
LQDQ01000032
Gammaproteobacteria
Pasteurella multocida [LQDQ]
56657
56582
-
Ala
GGC
[ENA]
¡û
>W1710999933
LQDY01000005
Gammaproteobacteria
Pasteurella multocida [LQDY]
56657
56582
-
Ala
GGC
[ENA]
¡û
>W1711000864
LQET01000031
Gammaproteobacteria
Pasteurella multocida [LQET]
42906
42831
-
Ala
GGC
[ENA]
¡û
>W1711002306
LQGB01000040
Gammaproteobacteria
Pasteurella multocida [LQGB]
42909
42834
-
Ala
GGC
[ENA]
¡û
>W1711002976
LQGR01000025
Gammaproteobacteria
Pasteurella multocida [LQGR]
56657
56582
-
Ala
GGC
[ENA]
¡û
>W1711117169
LUCY01000003
Gammaproteobacteria
Pasteurella multocida subsp. multocida [LUCY]
237703
237628
-
Ala
GGC
[ENA]
¡û
>W1711384499
MEDF01000003
Gammaproteobacteria
Pasteurella multocida [MEDF]
183398
183473
+
Ala
GGC
[ENA]
¡û
>W1711714591
MTDZ01000003
Gammaproteobacteria
Pasteurella multocida subsp. septica [MTDZ]
55158
55233
+
Ala
GGC
[ENA]
¡û
>W1711719667
MTII01000008
Gammaproteobacteria
Pasteurella multocida subsp. multocida [MTII]
115745
115820
+
Ala
GGC
[ENA]
¡û
>W1711719740
MTIK01000003
Gammaproteobacteria
Pasteurella multocida subsp. septica [MTIK]
122418
122493
+
Ala
GGC
[ENA]
¡û
>C171032581
CP014618
Gammaproteobacteria
Pasteurella multocida Pm-3 [CP014618]
1509524
1509449
-
Ala
GGC
-
¡û
>WENV181170595
OEIV010062031
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
257
182
-
Ala
GGC
[ENA]
¢þ
>C181018259
CP015567
Gammaproteobacteria
Pasteurella multocida USDA-ARS-USMARC-60675 [CP015567]
522929
523004
+
Ala
GGC
-
¡û
>C181201959
CP031553
Gammaproteobacteria
Pasteurella multocida EB168 [CP031553]
1589778
1589853
+
Ala
GGC
-
¡û
>C191153893
CP037861
Gammaproteobacteria
Pasteurella multocida subsp. multocida HN01 [CP037861]
40302
40377
+
Ala
GGC
-
¡û
>C191154030
CP037865
Gammaproteobacteria
Pasteurella multocida subsp. multocida HN02 [CP037865]
40302
40377
+
Ala
GGC
-
¡û
>C191162732
CP038871
Gammaproteobacteria
Pasteurella multocida FCf15 [CP038871]
2301231
2301156
-
Ala
GGC
-
¡û
>C191162853
CP038873
Gammaproteobacteria
Pasteurella multocida FCf45 [CP038873]
2090040
2090115
+
Ala
GGC
-
¡û
>W1910634604
LLKR01000004
Gammaproteobacteria
Pasteurella multocida subsp. multocida UNMSM2 [LLKR]
20297
20372
+
Ala
GGC
[ENA]
¡û
>W1910657343
MAPS01000002
Gammaproteobacteria
Pasteurella multocida Pm731 [MAPS]
239577
239502
-
Ala
GGC
[ENA]
¡û
>W1910728648
MGXQ01000081
Gammaproteobacteria
Gammaproteobacteria bacterium RIFCSPHIGHO2_02_FULL_42_13 [MGXQ]
19468
19543
+
Ala
GGC
[ENA]
¡û
>W1910728738
MGXT01000019
Gammaproteobacteria
Gammaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_35_23 [MGXT]
89283
89356
+
Ala
GGC
[ENA]
¡û
>W1910729438
MGYO01000013
Gammaproteobacteria
Gammaproteobacteria bacterium RIFCSPLOWO2_02_FULL_42_9 [MGYO]
125
200
+
Ala
GGC
[ENA]
¡û
>W1911205818
NRJG01000152
Gammaproteobacteria
Psittacicella hinzii 44 str. 111 [NRJG]
2297
2372
+
Ala
GGC
[ENA]
¡û
>C161005365
CP007205
Gammaproteobacteria
Pasteurella multocida subsp. multocida PMTB2.1 [CP007205]
37877
37952
+
Ala
GGC
-
¡û
>W1610928528
LUCY01000003
Gammaproteobacteria
Pasteurella multocida subsp. multocida [LUCY]
237703
237628
-
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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