This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.254365 (59 seq.)
>W1710914160
LNTC01000216
Campylobacterota
Aliarcobacter cryaerophilus [LNTC]
157
82
-
Lys
TTT
[ENA]
¡û
>W1711055326
LRUR01000057
Campylobacterota
Aliarcobacter cryaerophilus [LRUR]
173
98
-
Lys
TTT
[ENA]
¡û
>WENV180285912
OBID01810715
[OBID] metagenome; sludge
68
143
+
Lys
TTT
[ENA]
¢þ
>C08000281
CP000361
Campylobacterota
Aliarcobacter butzleri RM4018 [CP000361]
520098
520026
-
Lys
TTT
[Ensembl]
¡û
>C08000285
CP000361
Campylobacterota
Aliarcobacter butzleri RM4018 [CP000361]
519673
519601
-
Lys
TTT
[Ensembl]
¡û
>WENV170657820
JTFP01023065
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
441
516
+
Lys
TTT
[ENA]
¢þ
>C181225278
LT906455
Campylobacterota
Aliarcobacter butzleri NCTC 12481 [LT906455]
520093
520018
-
Lys
TTT
-
¡û
>C181225282
LT906455
Campylobacterota
Aliarcobacter butzleri NCTC 12481 [LT906455]
519668
519593
-
Lys
TTT
-
¡û
>C191084459
CP032097
Campylobacterota
Arcobacter ellisii LMG 26155 [CP032097]
665714
665639
-
Lys
TTT
-
¡û
>C191084463
CP032097
Campylobacterota
Arcobacter ellisii LMG 26155 [CP032097]
665284
665209
-
Lys
TTT
-
¡û
>C191084621
CP032100
Campylobacterota
Arcobacter suis CECT 7833 [CP032100]
645826
645751
-
Lys
TTT
-
¡û
>C191084625
CP032100
Campylobacterota
Arcobacter suis CECT 7833 [CP032100]
645375
645300
-
Lys
TTT
-
¡û
>C191178305
CP040507
Campylobacterota
Aliarcobacter butzleri JV22 [CP040507]
533704
533629
-
Lys
TTT
-
¡û
>C191178309
CP040507
Campylobacterota
Aliarcobacter butzleri JV22 [CP040507]
533278
533203
-
Lys
TTT
-
¡û
>C141005659
CP006615
Campylobacterota
Aliarcobacter butzleri 7h1h [CP006615]
518075
518000
-
Lys
TTT
[Ensembl]
¡û
>C141005663
CP006615
Campylobacterota
Aliarcobacter butzleri 7h1h [CP006615]
517648
517573
-
Lys
TTT
[Ensembl]
¡û
>W1910810857
MUXE01000009
Campylobacterota
Arcobacter caeni RW17-10 [MUXE]
62003
62078
+
Lys
TTT
[ENA]
¡û
>W1910810861
MUXE01000009
Campylobacterota
Arcobacter caeni RW17-10 [MUXE]
62460
62535
+
Lys
TTT
[ENA]
¡û
>W1911200205
NREO01000001
Campylobacterota
Arcobacter suis CECT7833 [NREO]
119918
119993
+
Lys
TTT
[ENA]
¡û
>W1911200209
NREO01000001
Campylobacterota
Arcobacter suis CECT7833 [NREO]
120369
120444
+
Lys
TTT
[ENA]
¡û
>W1911200256
NREP01000001
Campylobacterota
Arcobacter venerupis CECT7836 [NREP]
144829
144904
+
Lys
TTT
[ENA]
¡û
>W1911200260
NREP01000001
Campylobacterota
Arcobacter venerupis CECT7836 [NREP]
145285
145360
+
Lys
TTT
[ENA]
¡û
>W1911424381
NXGD01000007
Campylobacterota
Aliarcobacter cryaerophilus LMG 10229 [NXGD]
122166
122091
-
Lys
TTT
[ENA]
¡û
>W1911426321
NXIG01000005
Campylobacterota
Arcobacter ellisii CECT 7837 [NXIG]
83457
83382
-
Lys
TTT
[ENA]
¡û
>W1911426325
NXIG01000005
Campylobacterota
Arcobacter ellisii CECT 7837 [NXIG]
83027
82952
-
Lys
TTT
[ENA]
¡û
>W1911426357
NXIH01000001
Campylobacterota
Arcobacter defluvii CECT 7697 [NXIH]
369004
368929
-
Lys
TTT
[ENA]
¡û
>W1911426361
NXIH01000001
Campylobacterota
Arcobacter defluvii CECT 7697 [NXIH]
368593
368518
-
Lys
TTT
[ENA]
¡û
>W1911426409
NXII01000003
Campylobacterota
Arcobacter cloacae CECT 7834 [NXII]
134886
134811
-
Lys
TTT
[ENA]
¡û
>W1911426413
NXII01000003
Campylobacterota
Arcobacter cloacae CECT 7834 [NXII]
134436
134361
-
Lys
TTT
[ENA]
¡û
>W1911426496
NXIJ01000039
Campylobacterota
Arcobacter aquimarinus CECT 8442 [NXIJ]
126
51
-
Lys
TTT
[ENA]
¡û
>W1911576388
PDJZ01000001
Campylobacterota
Arcobacter cloacae F26 [PDJZ]
288446
288371
-
Lys
TTT
[ENA]
¡û
>W1911576453
PDKB01000017
Campylobacterota
Aliarcobacter vitoriensis CECT 9230 [PDKB]
55924
55999
+
Lys
TTT
[ENA]
¡û
>W1911576457
PDKB01000017
Campylobacterota
Aliarcobacter vitoriensis CECT 9230 [PDKB]
56303
56378
+
Lys
TTT
[ENA]
¡û
>W1911576469
PDKB01000056
Campylobacterota
Aliarcobacter vitoriensis CECT 9230 [PDKB]
381
306
-
Lys
TTT
[ENA]
¡û
>W1911746035
QVQX01000004
Campylobacterota
Aliarcobacter butzleri 17-1168 [QVQX]
90835
90910
+
Lys
TTT
[ENA]
¡û
>W1911746039
QVQX01000004
Campylobacterota
Aliarcobacter butzleri 17-1168 [QVQX]
91261
91336
+
Lys
TTT
[ENA]
¡û
>W1911775151
QXMK01000001
Campylobacterota
Aliarcobacter butzleri 55 [QXMK]
170395
170470
+
Lys
TTT
[ENA]
¡û
>W1911775155
QXMK01000001
Campylobacterota
Aliarcobacter butzleri 55 [QXMK]
170821
170896
+
Lys
TTT
[ENA]
¡û
>W1911775346
QXNB01000001
Campylobacterota
Aliarcobacter butzleri 6V [QXNB]
11790
11865
+
Lys
TTT
[ENA]
¡û
>W1911775350
QXNB01000001
Campylobacterota
Aliarcobacter butzleri 6V [QXNB]
12218
12293
+
Lys
TTT
[ENA]
¡û
>C11100402
AP012047
Campylobacterota
Aliarcobacter butzleri ED-1 [AP012047]
498344
498269
-
Lys
TTT
[Ensembl]
¡û
>C11100406
AP012047
Campylobacterota
Aliarcobacter butzleri ED-1 [AP012047]
497917
497842
-
Lys
TTT
[Ensembl]
¡û
>C11101078
AP012048
Campylobacterota
Arcobacter sp. L [AP012048]
652350
652275
-
Lys
TTT
[Ensembl]
¡û
>C11101082
AP012048
Campylobacterota
Arcobacter sp. L [AP012048]
651939
651864
-
Lys
TTT
[Ensembl]
¡û
>W1510762838
JAIQ01000106
Campylobacterota
Aliarcobacter butzleri L348 [JAIQ]
13179
13254
+
Lys
TTT
[ENA]
¡û
>W1510762857
JAIR01000028
Campylobacterota
Aliarcobacter butzleri L349 [JAIR]
10
85
+
Lys
TTT
[ENA]
¡û
>W1510762864
JAIR01000039
Campylobacterota
Aliarcobacter butzleri L349 [JAIR]
13337
13412
+
Lys
TTT
[ENA]
¡û
>W1510762896
JAIS01000039
Campylobacterota
Aliarcobacter butzleri L351 [JAIS]
271
196
-
Lys
TTT
[ENA]
¡û
>W1510762933
JAIT01000023
Campylobacterota
Aliarcobacter butzleri L352 [JAIT]
13178
13253
+
Lys
TTT
[ENA]
¡û
>W1510762943
JAIT01000060
Campylobacterota
Aliarcobacter butzleri L352 [JAIT]
201335
201260
-
Lys
TTT
[ENA]
¡û
>W1510762957
JAIU01000022
Campylobacterota
Aliarcobacter butzleri L353 [JAIU]
13178
13253
+
Lys
TTT
[ENA]
¡û
>W1510762979
JAIV01000024
Campylobacterota
Aliarcobacter butzleri L354 [JAIV]
13177
13252
+
Lys
TTT
[ENA]
¡û
>W1510762998
JAIW01000005
Campylobacterota
Aliarcobacter butzleri L355 [JAIW]
14869
14794
-
Lys
TTT
[ENA]
¡û
>W1510763019
JAIW01000037
Campylobacterota
Aliarcobacter butzleri L355 [JAIW]
13177
13252
+
Lys
TTT
[ENA]
¡û
>W1510763063
JAIX01000068
Campylobacterota
Aliarcobacter butzleri L350 [JAIX]
8963
9038
+
Lys
TTT
[ENA]
¡û
>W11143283
AEPT01000011
Campylobacterota
Aliarcobacter butzleri JV22 [AEPT]
9817
9742
-
Lys
TTT
[ENA]
¡û
>W11143287
AEPT01000011
Campylobacterota
Aliarcobacter butzleri JV22 [AEPT]
9391
9316
-
Lys
TTT
[ENA]
¡û
>W11167773
AFNL01000059
Campylobacterota
Aliarcobacter butzleri 7h1h [AFNL]
13
88
+
Lys
TTT
[ENA]
¡û
>W1610896372
LRUR01000057
Campylobacterota
Aliarcobacter cryaerophilus [LRUR]
173
98
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK