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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.254387 (66 seq.)
>W1711124608
LUKH01000042
Alphaproteobacteria
Leisingera sp. F5 [LUKH]
487
412
-
Lys
TTT
[ENA]
¡û
>W1711124616
LUKH01000161
Alphaproteobacteria
Leisingera sp. F5 [LUKH]
2597
2522
-
Lys
TTT
[ENA]
¡û
>W1711229349
LXYI01000089
Alphaproteobacteria
Sulfitobacter sp. EhC04 [LXYI]
317560
317635
+
Lys
TTT
[ENA]
¡û
>W1711282606
LZNT01000089
Alphaproteobacteria
Ruegeria sp. PBVC088 [LZNT]
29573
29648
+
Lys
TTT
[ENA]
¡û
>W1711709175
MSYP01000001
Alphaproteobacteria
Rhodovulum sulfidophilum [MSYP]
107064
107139
+
Lys
TTT
[ENA]
¡û
>W1712106697
NIVZ01000026
Alphaproteobacteria
Mameliella alba atlantica [NIVZ]
34193
34118
-
Lys
TTT
[ENA]
¡û
>W1712106721
NIWA01000004
Alphaproteobacteria
Mameliella alba lacteus [NIWA]
101812
101887
+
Lys
TTT
[ENA]
¡û
>W1712106767
NIWB01000005
Alphaproteobacteria
Mameliella alba pacificum [NIWB]
29341
29416
+
Lys
TTT
[ENA]
¡û
>W1712106807
NIWC01000002
Alphaproteobacteria
Mameliella alba phaeodactyli [NIWC]
104692
104767
+
Lys
TTT
[ENA]
¡û
>W131241999
BASI01000001
Alphaproteobacteria
Rhodovulum sulfidophilum DSM 1374 [BASI]
861380
861305
-
Lys
TTT
[ENA]
¡û
>C171092113
CP019312
Alphaproteobacteria
Tateyamaria omphalii DOK1-4 [CP019312]
3205804
3205729
-
Lys
TTT
-
¡û
>WENV180105600
OAPD01112106
[OAPD] marine metagenome; 2010
224
149
-
Lys
TTT
[ENA]
¢þ
>W141082485
AUNB01000002
Alphaproteobacteria
Thioclava indica DT23-4 [AUNB]
31491
31566
+
Lys
TTT
[ENA]
¡û
>W08005917
ABIG01000008
Alphaproteobacteria
Roseobacter litoralis Och 149 [ABIG]
174367
174295
-
Lys
TTT
[ENA]
¡û
>W141290112
JASC01000013
Alphaproteobacteria
Sulfitobacter noctilucae NB-68 [JASC]
331196
331121
-
Lys
TTT
[ENA]
¡û
>W141290177
JASD01000008
Alphaproteobacteria
Sulfitobacter noctilucicola NB-77 [JASD]
706671
706596
-
Lys
TTT
[ENA]
¡û
>WENV183627464
OOGL01006300
[OOGL] marine metagenome; sea ice
1589
1664
+
Lys
TTT
[ENA]
¢þ
>WENV183705255
PDWI01001273
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
38322
38397
+
Lys
TTT
[ENA]
¢þ
>WENV183707549
PDWI01008972
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
6427
6502
+
Lys
TTT
[ENA]
¢þ
>WENV183710833
PDWI01054203
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
3255
3180
-
Lys
TTT
[ENA]
¢þ
>WENV183713931
PDWI01159721
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1527
1452
-
Lys
TTT
[ENA]
¢þ
>WENV183714934
PDWI01211826
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1253
1178
-
Lys
TTT
[ENA]
¢þ
>WENV183715301
PDWI01231752
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
20
95
+
Lys
TTT
[ENA]
¢þ
>WENV183717443
PDWJ01000927
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
37674
37749
+
Lys
TTT
[ENA]
¢þ
>WENV183718081
PDWJ01002334
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
20
95
+
Lys
TTT
[ENA]
¢þ
>WENV183718315
PDWJ01003316
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
22
97
+
Lys
TTT
[ENA]
¢þ
>WENV183719454
PDWJ01014381
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
5178
5103
-
Lys
TTT
[ENA]
¢þ
>WENV170013321
ATLU01005551
[ATLU] bioreactor metagenome; continuous culture bioreactor inoculated with sediment procaryotes from the German
477
552
+
Lys
TTT
[ENA]
¢þ
>WENV170365826
CETO01004973
[CETO] marine metagenome genome assembly TARA_122_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
352
277
-
Lys
TTT
[ENA]
¢þ
>WENV170635359
JDSF01004979
[JDSF] bioreactor metagenome; continuous culture bioreactor denitrification-DNRA
595
520
-
Lys
TTT
[ENA]
¢þ
>WENV170635661
JDSH01000001
[JDSH] bioreactor metagenome; continuous culture bioreactor electron acceptor NO2- transfer2; day 38 after inoculation
106034
105959
-
Lys
TTT
[ENA]
¢þ
>WENV170895634
MDTD01082261
[MDTD] marine metagenome; seawater
1934
1859
-
Lys
TTT
[ENA]
¢þ
>C181064494
CP022415
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae SMR1 [CP022415]
3012331
3012256
-
Lys
TTT
-
¡û
>WENV021861
AACY020602167
Marine microbial communities from Global Ocean Sampling (GOS)
483
406
-
Lys
TTT
[ENA]
>C191141131
CP035417
Alphaproteobacteria
Leisingera sp. NJS204 [CP035417]
4179509
4179584
+
Lys
TTT
-
¡û
>C191158478
CP038234
Alphaproteobacteria
Leisingera sp. NJS201 [CP038234]
3972632
3972557
-
Lys
TTT
-
¡û
>W141564882
JIBC01000005
Alphaproteobacteria
Sulfitobacter sp. 20_GPM-1509m [JIBC]
594907
594982
+
Lys
TTT
[ENA]
¡û
>W1910285247
FREY01000002
Alphaproteobacteria
Rhodobacteraceae bacterium Alg231-04 [FREY]
453803
453728
-
Lys
TTT
[ENA]
¡û
>W1910443072
FWFT01000002
Alphaproteobacteria
Pseudooctadecabacter jejudonensis CECT 8397 [FWFT]
687103
687178
+
Lys
TTT
[ENA]
¡û
>W1911539933
ONZJ01000002
Alphaproteobacteria
Rhodobacteraceae bacterium EL129 [ONZJ]
3409914
3409989
+
Lys
TTT
[ENA]
¡û
>W1810477621
QAOY01000006
Alphaproteobacteria
Mameliella alba DSM 26384 [QAOY]
30240
30315
+
Lys
TTT
[ENA]
¡û
>W1810494713
QBFD01000015
Alphaproteobacteria
Sulfitobacter sp. DFL-14 [QBFD]
359699
359624
-
Lys
TTT
[ENA]
¡û
>W1810494765
QBFE01000024
Alphaproteobacteria
Sulfitobacter sp. DFL-23 [QBFE]
38636
38711
+
Lys
TTT
[ENA]
¡û
>W1810494793
QBFF01000033
Alphaproteobacteria
Pseudosulfitobacter sp. DSM 107133 PIC-76 [QBFF]
142173
142248
+
Lys
TTT
[ENA]
¡û
>W1510000308
AQQZ01000002
Alphaproteobacteria
Pseudaestuariivita atlantica 22II-S11-z3 [AQQZ]
74736
74811
+
Lys
TTT
[ENA]
¡û
>W1511483004
JWLL01000005
Alphaproteobacteria
Tateyamaria sp. ANG-S1 [JWLL]
266430
266355
-
Lys
TTT
[ENA]
¡û
>C161001455
AP014800
Alphaproteobacteria
Rhodovulum sulfidophilum DSM 2351 [AP014800]
4354472
4354397
-
Lys
TTT
[Ensembl]
¡û
>C161087748
CP015418
Alphaproteobacteria
Rhodovulum sulfidophilum DSM 1374 [CP015418]
864841
864766
-
Lys
TTT
-
¡û
>C161087797
CP015421
Alphaproteobacteria
Rhodovulum sulfidophilum SNK001 [CP015421]
828961
828886
-
Lys
TTT
[Ensembl]
¡û
>W1610018429
AQQX01000001
Alphaproteobacteria
Pseudooceanicola atlanticus [AQQX]
331815
331890
+
Lys
TTT
[ENA]
¡û
>W1610092898
CYSE01000001
Alphaproteobacteria
Tropicibacter naphthalenivorans [CYSE]
153112
153187
+
Lys
TTT
[ENA]
¡û
>WENV070434
AACY023808574
Marine microbial communities from Global Ocean Sampling (GOS)
1456
1379
-
Lys
TTT
[ENA]
>W1610935580
LUKH01000042
Alphaproteobacteria
Leisingera sp. F5 [LUKH]
487
412
-
Lys
TTT
[ENA]
¡û
>W1610935588
LUKH01000161
Alphaproteobacteria
Leisingera sp. F5 [LUKH]
2597
2522
-
Lys
TTT
[ENA]
¡û
>W1611013219
LXYI01000089
Alphaproteobacteria
Sulfitobacter sp. EhC04 [LXYI]
317560
317635
+
Lys
TTT
[ENA]
¡û
>W1710015645
AQQX01000001
Alphaproteobacteria
Pseudooceanicola atlanticus [AQQX]
331815
331890
+
Lys
TTT
[ENA]
¡û
>W1710096153
CYSE01000001
Alphaproteobacteria
Tropicibacter naphthalenivorans [CYSE]
153112
153187
+
Lys
TTT
[ENA]
¡û
>W1710512340
FMZI01000007
Alphaproteobacteria
Mameliella alba [FMZI]
29189
29264
+
Lys
TTT
[ENA]
¡û
>W1710559743
FOMW01000005
Alphaproteobacteria
Sulfitobacter brevis [FOMW]
311140
311215
+
Lys
TTT
[ENA]
¡û
>W1710567750
FOSZ01000003
Alphaproteobacteria
Shimia haliotis [FOSZ]
152334
152409
+
Lys
TTT
[ENA]
¡û
>W1710568462
FOTQ01000001
Alphaproteobacteria
Shimia aestuarii [FOTQ]
1286897
1286822
-
Lys
TTT
[ENA]
¡û
>W1710584533
FQVP01000004
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae [FQVP]
7866
7791
-
Lys
TTT
[ENA]
¡û
>W1710585620
FQWM01000002
Alphaproteobacteria
Cognatishimia maritima maritimus [FQWM]
389593
389668
+
Lys
TTT
[ENA]
¡û
>W1710586340
FQXC01000006
Alphaproteobacteria
Marivita hallyeonensis [FQXC]
117887
117962
+
Lys
TTT
[ENA]
¡û
>W1710600150
FTPS01000001
Alphaproteobacteria
Pontibaca methylaminivorans [FTPS]
2303367
2303292
-
Lys
TTT
[ENA]
¡û
>W1710606555
FWXX01000001
Alphaproteobacteria
Tropicibacter naphthalenivorans [FWXX]
744443
744368
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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