This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.254456 (42 seq.)
>W1711173012
LWCO01000053
Deinococcota
Meiothermus taiwanensis [LWCO]
223
298
+
Thr
TGT
[ENA]
¡û
>W1711708247
MSTI01000071
Deinococcota
Deinococcus marmoris [MSTI]
1019
944
-
Thr
TGT
[ENA]
¡û
>W131230812
AUHY01000016
Deinococcota
Meiothermus rufus DSM 22234 [AUHY]
1768
1693
-
Thr
TGT
[ENA]
¡û
>W131237778
AUQW01000113
Deinococcota
Calidithermus chliarophilus DSM 9957 [AUQW]
50661
50736
+
Thr
TGT
[ENA]
¡û
>W131240947
BAOR01000002
Deinococcota
Meiothermus ruber H328 [BAOR]
607617
607542
-
Thr
TGT
[ENA]
¡û
>W131167670
ARDL01000011
Deinococcota
Calidithermus timidus DSM 17022 [ARDL]
980
905
-
Thr
TGT
[ENA]
¡û
>WENV180013306
FMSI01065787
[FMSI] soil metagenome; Soil
302
227
-
Thr
TGT
[ENA]
¢þ
>WENV180014802
FQKF010154772
[FQKF] soil metagenome; Soil
9
84
+
Thr
TGT
[ENA]
¢þ
>WENV181410981
OGCI01009677
[OGCI] hot springs metagenome; Hot spring water
2818
2893
+
Thr
TGT
[ENA]
¢þ
>WENV181416476
OGCL01091280
[OGCL] hot springs metagenome; Hot spring water
423
498
+
Thr
TGT
[ENA]
¢þ
>W141169852
AXWR01000074
Deinococcota
Meiothermus taiwanensis DSM 14542 [AXWR]
189
264
+
Thr
TGT
[ENA]
¡û
>WENV018993
AACY020523658
Marine microbial communities from Global Ocean Sampling (GOS)
5106
5031
-
Thr
TGT
[ENA]
>WENV183748446
PPFU01040470
[PPFU] hypolithon metagenome; Antarctic Hypolithon
263
188
-
Thr
TGT
[ENA]
¢þ
>WENV183749029
PPFU01109788
[PPFU] hypolithon metagenome; Antarctic Hypolithon
344
419
+
Thr
TGT
[ENA]
¢þ
>WENV170248269
CEQQ01113458
[CEQQ] marine metagenome genome assembly TARA_076_DCM_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
614
539
-
Thr
TGT
[ENA]
¢þ
>WENV170700817
LJSS01001772
[LJSS] hot springs metagenome; water from Lobios Hot Spring
1025
950
-
Thr
TGT
[ENA]
¢þ
>WENV170958724
MKWU01001819
[MKWU] sponge metagenome;
681
606
-
Thr
TGT
[ENA]
¢þ
>W09109419
ABUF01000003
Deinococcota
Meiothermus ruber DSM 1279 [ABUF]
75433
75508
+
Thr
TGT
[ENA]
¡û
>W09109479
ABUG01000020
Deinococcota
Allomeiothermus silvanus DSM 9946 [ABUG]
1631
1706
+
Thr
TGT
[ENA]
¡û
>C191018582
CP021130
Deinococcota
Meiothermus taiwanensis WR-220 [CP021130]
1784074
1784149
+
Thr
TGT
-
¡û
>C191121236
CP034183
Deinococcota
Deinococcus psychrotolerans S14-83 [CP034183, CP034184]
431962
431887
-
Thr
TGT
-
¡û
>W141557680
JHVI01000033
Deinococcota
Meiothermus cerbereus DSM 11376 [JHVI]
28932
29007
+
Thr
TGT
[ENA]
¡û
>W141731147
JNIV01000159
Deinococcota
Deinococcus marmoris DSM 12784 [JNIV]
1691
1616
-
Thr
TGT
[ENA]
¡û
>W141731187
JNIW01000055
Deinococcota
Deinococcus frigens DSM 12807 [JNIW]
1027
952
-
Thr
TGT
[ENA]
¡û
>W141816921
JQKG01000019
Deinococcota
Deinococcus misasensis DSM 22328 [JQKG]
682
607
-
Thr
TGT
[ENA]
¡û
>W1911751920
QWKX01000147
Deinococcota
Meiothermus taiwanensis JCM 15151 [QWKX]
2039
1964
-
Thr
TGT
[ENA]
¡û
>W1911751969
QWKY01000151
Deinococcota
Meiothermus hypogaeus DSM 23238 [QWKY]
612
537
-
Thr
TGT
[ENA]
¡û
>W1911751992
QWKZ01000027
Deinococcota
Meiothermus luteus KCTC 52599 [QWKZ]
29359
29434
+
Thr
TGT
[ENA]
¡û
>W1911752055
QWLA01000045
Deinococcota
Calidithermus roseus NBRC 110900 [QWLA]
30628
30703
+
Thr
TGT
[ENA]
¡û
>W1911752082
QWLB01000010
Deinococcota
Meiothermus granaticius NBRC 107808 AF-68 [QWLB]
2285
2360
+
Thr
TGT
[ENA]
¡û
>W1911766351
QXDL01000319
Deinococcota
Calidithermus terrae DSM 26712 [QXDL]
2548
2623
+
Thr
TGT
[ENA]
¡û
>W1911802490
QYUJ01000014
Deinococcota
Deinococcus cavernae K2S05-167 [QYUJ]
986981
987056
+
Thr
TGT
[ENA]
¡û
>W1810679083
QKOB01000027
Deinococcota
Meiothermus sp. Pnk-1 [QKOB]
819
744
-
Thr
TGT
[ENA]
¡û
>W1810783164
QQSV01000003
Deinococcota
Meiothermus sp. QL-1 [QQSV]
630
555
-
Thr
TGT
[ENA]
¡û
>C151063665
CP010028
Deinococcota
Deinococcus radiopugnans DY59 [CP010028]
220897
220822
-
Thr
TGT
[Ensembl]
¡û
>C10109561
CP001743
Deinococcota
Meiothermus ruber DSM 1279 [CP001743]
1195068
1194993
-
Thr
TGT
-
¡û
>C10109603
CP002042
Deinococcota
Allomeiothermus silvanus DSM 9946 [CP002042]
2731446
2731371
-
Thr
TGT
[Ensembl]
¡û
>C10113738
CP002049
Deinococcota
Truepera radiovictrix DSM 17093 [CP002049]
2713443
2713368
-
Thr
TGT
[Ensembl]
¡û
>W1511344750
JRGA01000001
Deinococcota
Meiothermus ruber TC-1 [JRGA]
151807
151882
+
Thr
TGT
[ENA]
¡û
>W1511508318
JXOP01000025
Deinococcota
Meiothermus taiwanensis A [JXOP]
566
491
-
Thr
TGT
[ENA]
¡û
>C161003475
CP005385
Deinococcota
Meiothermus ruber DSM 1279 [CP005385]
1128092
1128017
-
Thr
TGT
-
¡û
>W1610981617
LWCO01000053
Deinococcota
Meiothermus taiwanensis [LWCO]
223
298
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK