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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.254525 (37 seq.)
>W1711294791
MABH01000245
Alphaproteobacteria
Cereibacter johrii [MABH]
29402
29477
+
Arg
CCT
[ENA]
¡û
>C171037017
CP015210
Alphaproteobacteria
Cereibacter sphaeroides MBTLJ-13 [CP015210, CP015211]
255273
255198
-
Arg
CCT
-
¡û
>W131058626
ANFS01000002
Alphaproteobacteria
Rhodobacter sp. AKP1 [ANFS]
2243
2168
-
Arg
CCT
[ENA]
¡û
>C019242
CP000143
Alphaproteobacteria
Cereibacter sphaeroides 2.4.1 [CP000143, CP000144]
255271
255196
-
Arg
CCT
[Ensembl]
¡û
>C019280
CP000661
Alphaproteobacteria
Cereibacter sphaeroides [CP000661]
2622537
2622612
+
Arg
CCT
[Ensembl]
¡û
>C019332
CP000577
Alphaproteobacteria
Cereibacter sphaeroides ATCC 17029 [CP000577, CP000578]
314176
314101
-
Arg
CCT
[Ensembl]
¡û
>WENV180232417
OBCO01000396
[OBCO] synthetic metagenome; purchased from BEI Resources HM-276D
1535
1460
-
Arg
CCT
[ENA]
¢þ
>WENV180233376
OBCP01000396
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
1535
1460
-
Arg
CCT
[ENA]
¢þ
>w001249
AAAE01000115
Alphaproteobacteria
Cereibacter sphaeroides [AAAE]
2106
2034
-
Arg
CCT
[ENA]
¡û
>WENV180569797
OCLR01000472
[OCLR] synthetic metagenome; purchased from BEI Resources HM-276D
1535
1460
-
Arg
CCT
[ENA]
¢þ
>WENV180570746
OCLS01000472
[OCLS] synthetic metagenome; purchased from BEI Resources HM-276D
32601
32676
+
Arg
CCT
[ENA]
¢þ
>WENV180571748
OCLT01000386
[OCLT] synthetic metagenome; purchased from BEI Resources HM-276D
1535
1460
-
Arg
CCT
[ENA]
¢þ
>WENV180573998
OCLW01000398
[OCLW] synthetic metagenome; purchased from BEI Resources HM-276D
1535
1460
-
Arg
CCT
[ENA]
¢þ
>WENV180640054
OCRL01000382
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
1535
1460
-
Arg
CCT
[ENA]
¢þ
>WENV180641020
OCRM01000413
[OCRM] synthetic metagenome; purchased from BEI Resources HM-276D
1535
1460
-
Arg
CCT
[ENA]
¢þ
>C181017249
CP015287
Alphaproteobacteria
Cereibacter sphaeroides MBTLJ-20 [CP015287, CP015288]
255270
255195
-
Arg
CCT
-
¡û
>C181084434
CP023548
Alphaproteobacteria
Rhodobacter sp. CZR27 [CP023548]
342744
342669
-
Arg
CCT
-
¡û
>C181191134
CP030271
Alphaproteobacteria
Cereibacter sphaeroides 2.4.1 [CP030271, CP030272]
255268
255193
-
Arg
CCT
-
¡û
>C191079658
CP031750
Alphaproteobacteria
Cereibacter sphaeroides EBL0706 [CP031750, CP031751]
2364746
2364821
+
Arg
CCT
-
¡û
>C191151031
CP036419
Alphaproteobacteria
Cereibacter sphaeroides HJ [CP036419, CP036420]
311484
311409
-
Arg
CCT
-
¡û
>W09104709
AAME01000003
Alphaproteobacteria
Cereibacter sphaeroides ATCC 17025 [AAME]
135334
135259
-
Arg
CCT
[ENA]
¡û
>W09104755
AAMF01000001
Alphaproteobacteria
Cereibacter sphaeroides ATCC 17029 [AAMF]
397312
397387
+
Arg
CCT
[ENA]
¡û
>C09109061
CP001150
Alphaproteobacteria
Cereibacter sphaeroides KD131 KD131; KCTC 12085 [CP001150, CP001151]
3117716
3117641
-
Arg
CCT
[Ensembl]
¡û
>W1910548871
FZOV01000004
Alphaproteobacteria
Cereibacter sphaeroides DSM 18937 [FZOV]
311347
311422
+
Arg
CCT
[ENA]
¡û
>W1911491913
OAOQ01000002
Alphaproteobacteria
Cereibacter ovatus JA234 [OAOQ]
85163
85088
-
Arg
CCT
[ENA]
¡û
>W1911749436
QWGP01000003
Alphaproteobacteria
Cereibacter sphaeroides FY [QWGP]
829
754
-
Arg
CCT
[ENA]
¡û
>W1911766279
QXDK01000008
Alphaproteobacteria
Cereibacter sphaeroides SCJ [QXDK]
5444
5369
-
Arg
CCT
[ENA]
¡û
>W1810116279
PHOB01000067
Alphaproteobacteria
Cereibacter sphaeroides YL101 [PHOB]
33088
33163
+
Arg
CCT
[ENA]
¡û
>W1810119964
PHSI01000097
Alphaproteobacteria
Cereibacter azotoformans YLK20 [PHSI]
699
624
-
Arg
CCT
[ENA]
¡û
>W1810463814
PZZW01000001
Alphaproteobacteria
Cereibacter johrii JA192 [PZZW]
7195
7120
-
Arg
CCT
[ENA]
¡û
>W1810477369
QAOT01000008
Alphaproteobacteria
Cereibacter azotoformans KA25 [QAOT]
3790
3715
-
Arg
CCT
[ENA]
¡û
>W1810699129
QMCC01000017
Alphaproteobacteria
Cereibacter johrii CDR-SL 7Cii [QMCC]
79768
79693
-
Arg
CCT
[ENA]
¡û
>W1810785181
QRBG01000006
Alphaproteobacteria
Cereibacter sphaeroides f. sp. denitrificans IL106 [QRBG]
59434
59359
-
Arg
CCT
[ENA]
¡û
>W11160181
AFER01000001
Alphaproteobacteria
Cereibacter sphaeroides WS8N [AFER]
2824954
2824879
-
Arg
CCT
[ENA]
¡û
>C161048377
CP012960
Alphaproteobacteria
Cereibacter sphaeroides MBTLJ-8 [CP012960, CP012961]
255272
255197
-
Arg
CCT
-
¡û
>W121076801
AKBU01000001
Alphaproteobacteria
Cereibacter sphaeroides 2.4.1 [AKBU]
1277135
1277060
-
Arg
CCT
[ENA]
¡û
>W121102148
AKVW01000001
Alphaproteobacteria
Cereibacter sphaeroides 2.4.1 [AKVW]
255271
255196
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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