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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.254604 (47 seq.)
>W1710870086
LMKF01000031
Actinomycetota
Microbacterium sp. Leaf203 [LMKF]
308439
308364
-
Arg
TCT
[ENA]
¡û
>W1710875798
LMOR01000002
Actinomycetota
Microbacterium sp. Leaf151 [LMOR]
319107
319032
-
Arg
TCT
[ENA]
¡û
>W1710876526
LMPH01000003
Actinomycetota
Microbacterium sp. Leaf179 [LMPH]
292624
292549
-
Arg
TCT
[ENA]
¡û
>W1710878587
LMRB01000003
Actinomycetota
Microbacterium sp. Leaf436 [LMRB]
305585
305510
-
Arg
TCT
[ENA]
¡û
>W1710909104
LNQG01000004
Actinomycetota
Microbacterium enclense [LNQG]
321740
321665
-
Arg
TCT
[ENA]
¡û
>W1711009287
LQQP01000012
Actinomycetota
Microbacterium sp. T32 [LQQP]
402116
402041
-
Arg
TCT
[ENA]
¡û
>W1711385525
MEEH01000056
Actinomycetota
Microbacterium sp. SCN 71-17 [MEEH]
15437
15362
-
Arg
TCT
[ENA]
¡û
>W1711503415
MKTP01000001
Actinomycetota
Microbacterium sp. 71-36 [MKTP]
392896
392971
+
Arg
TCT
[ENA]
¡û
>W1711724782
MTQM01000009
Actinomycetota
Microbacterium sp. CSI-V [MTQM]
217398
217473
+
Arg
TCT
[ENA]
¡û
>C171065837
CP017674
Actinomycetota
Microbacterium sp. BH-3-3-3 [CP017674]
67684
67609
-
Arg
TCT
-
¡û
>W141223163
BADA01000033
Actinomycetota
Microbacterium sp. B19 [BADA]
5463
5538
+
Arg
TCT
[ENA]
¡û
>WENV171003365
NNBT01007051
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
900
975
+
Arg
TCT
[ENA]
¢þ
>C191073212
CP031015
Actinomycetota
Microbacterium sp. ABRD28 [CP031015]
2221687
2221761
+
Arg
TCT
-
¡û
>C191122371
CP034245
Actinomycetota
Microbacterium sp. 10M-3C3 [CP034245]
1964871
1964945
+
Arg
TCT
-
¡û
>C191158800
CP038266
Actinomycetota
Microbacterium wangchenii dk512 [CP038266]
2087583
2087656
+
Arg
TCT
-
¡û
>W141739327
JNNT01000016
Actinomycetota
Microbacterium sp. SUBG005 [JNNT]
465
540
+
Arg
TCT
[ENA]
¡û
>W141739405
JNNT01003805
Actinomycetota
Microbacterium sp. SUBG005 [JNNT]
494
419
-
Arg
TCT
[ENA]
¡û
>W141739419
JNNT01004818
Actinomycetota
Microbacterium sp. SUBG005 [JNNT]
208
133
-
Arg
TCT
[ENA]
¡û
>W1910181932
BJML01000008
Actinomycetota
Microbacterium testaceum NBRC 12675 [BJML]
30931
30856
-
Arg
TCT
[ENA]
¡û
>W1911140373
NOYP01000115
Actinomycetota
Rhodococcus sp. 06-1477-1B [NOYP]
129814
129739
-
Arg
TCT
[ENA]
¡û
>W1810234135
PPEE01000004
Actinomycetota
Microbacterium testaceum KU313 [PPEE]
185625
185550
-
Arg
TCT
[ENA]
¡û
>W1810475488
QAJB01000220
Actinomycetota
Microbacterium sp. HMWF026 [QAJB]
1981
2056
+
Arg
TCT
[ENA]
¡û
>W1810538346
QDFT01000011
Actinomycetota
Microbacterium testaceum TPD7010 [QDFT]
9809
9734
-
Arg
TCT
[ENA]
¡û
>W1810787045
QRDK01000004
Actinomycetota
Microbacterium sp. AG157 [QRDK]
307239
307314
+
Arg
TCT
[ENA]
¡û
>W1810861328
QTTU01000002
Actinomycetota
Microbacterium chocolatum 1320 [QTTU]
310826
310751
-
Arg
TCT
[ENA]
¡û
>C11115205
AP012052
Actinomycetota
Microbacterium testaceum StLB037 [AP012052]
3573083
3573010
-
Arg
TCT
[Ensembl]
¡û
>W1610590763
LDRR01000048
Actinomycetota
Microbacterium testaceum [LDRR]
25879
25806
-
Arg
TCT
[ENA]
¡û
>W1610590793
LDRS01000031
Actinomycetota
Microbacterium testaceum [LDRS]
32960
32887
-
Arg
TCT
[ENA]
¡û
>W1610590854
LDRT01000100
Actinomycetota
Microbacterium testaceum [LDRT]
3706
3779
+
Arg
TCT
[ENA]
¡û
>W1610590886
LDRU01000032
Actinomycetota
Microbacterium testaceum [LDRU]
29360
29433
+
Arg
TCT
[ENA]
¡û
>W1610590936
LDRV01000069
Actinomycetota
Microbacterium testaceum [LDRV]
12416
12343
-
Arg
TCT
[ENA]
¡û
>W1610732432
LMKF01000031
Actinomycetota
Microbacterium sp. Leaf203 [LMKF]
308439
308364
-
Arg
TCT
[ENA]
¡û
>W1610738144
LMOR01000002
Actinomycetota
Microbacterium sp. Leaf151 [LMOR]
319107
319032
-
Arg
TCT
[ENA]
¡û
>W1610738872
LMPH01000003
Actinomycetota
Microbacterium sp. Leaf179 [LMPH]
292624
292549
-
Arg
TCT
[ENA]
¡û
>W1610740933
LMRB01000003
Actinomycetota
Microbacterium sp. Leaf436 [LMRB]
305585
305510
-
Arg
TCT
[ENA]
¡û
>W1610767463
LNQG01000004
Actinomycetota
Microbacterium enclense [LNQG]
321740
321665
-
Arg
TCT
[ENA]
¡û
>W1610857807
LQQP01000012
Actinomycetota
Microbacterium sp. T32 [LQQP]
402116
402041
-
Arg
TCT
[ENA]
¡û
>W1710510826
FMYG01000002
Actinomycetota
Microbacterium enclense [FMYG]
321740
321665
-
Arg
TCT
[ENA]
¡û
>W1710525085
FNJG01000002
Actinomycetota
Microbacterium sp. ru370.1 [FNJG]
415722
415797
+
Arg
TCT
[ENA]
¡û
>W1710525407
FNJN01000003
Actinomycetota
Microbacterium testaceum StLB037 [FNJN]
462635
462710
+
Arg
TCT
[ENA]
¡û
>W1710597992
FTNQ01000001
Actinomycetota
Microbacterium sp. RURRCA19A [FTNQ]
270954
270879
-
Arg
TCT
[ENA]
¡û
>W1710600056
FTPQ01000002
Actinomycetota
Microbacterium sp. RU1D [FTPQ]
415468
415543
+
Arg
TCT
[ENA]
¡û
>W1710710043
LDRR01000048
Actinomycetota
Microbacterium testaceum [LDRR]
25879
25806
-
Arg
TCT
[ENA]
¡û
>W1710710073
LDRS01000031
Actinomycetota
Microbacterium testaceum [LDRS]
32960
32887
-
Arg
TCT
[ENA]
¡û
>W1710710134
LDRT01000100
Actinomycetota
Microbacterium testaceum [LDRT]
3706
3779
+
Arg
TCT
[ENA]
¡û
>W1710710166
LDRU01000032
Actinomycetota
Microbacterium testaceum [LDRU]
29360
29433
+
Arg
TCT
[ENA]
¡û
>W1710710216
LDRV01000069
Actinomycetota
Microbacterium testaceum [LDRV]
12416
12343
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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