This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.254606 (59 seq.)
>W1710866749
LMHS01000003
Actinomycetota
Microbacterium sp. Root180 [LMHS]
199530
199605
+
Arg
CCG
[ENA]
¡û
>W1710876633
LMPK01000005
Actinomycetota
Microbacterium sp. Leaf351 [LMPK]
87716
87791
+
Arg
CCG
[ENA]
¡û
>W1710909112
LNQG01000007
Actinomycetota
Microbacterium enclense [LNQG]
154827
154902
+
Arg
CCG
[ENA]
¡û
>W1711022938
LRAD01000042
Actinomycetota
Microbacterium laevaniformans [LRAD]
9237
9310
+
Arg
CCG
[ENA]
¡û
>W1711270749
LZEM01000010
Actinomycetota
Microbacterium arborescens [LZEM]
63003
63078
+
Arg
CCG
[ENA]
¡û
>W1711385583
MEEJ01000003
Actinomycetota
Microbacterium sp. SCN 70-200 [MEEJ]
213573
213500
-
Arg
CCG
[ENA]
¡û
>W1711385651
MEEK01000047
Actinomycetota
Microbacterium sp. SCN 70-27 [MEEK]
10302
10375
+
Arg
CCG
[ENA]
¡û
>W1711385665
MEEL01000017
Actinomycetota
Microbacterium sp. SCN 69-37 [MEEL]
22691
22764
+
Arg
CCG
[ENA]
¡û
>W1711386959
MEGA01000097
Actinomycetota
Microbacterium sp. SCN 71-21 [MEGA]
7272
7347
+
Arg
CCG
[ENA]
¡û
>W131161923
AQYD01000006
Actinomycetota
Microbacterium sp. 292MF [AQYD]
837298
837223
-
Arg
CCG
[ENA]
¡û
>W1711501597
MKRU01000086
Actinomycetota
Microbacterium sp. 69-7 [MKRU]
85657
85584
-
Arg
CCG
[ENA]
¡û
>W1711502206
MKSL01000016
Actinomycetota
Microbacterium sp. 71-23 [MKSL]
95200
95275
+
Arg
CCG
[ENA]
¡û
>W1711503455
MKTQ01000008
Actinomycetota
Microbacterium sp. 70-16 [MKTQ]
24772
24845
+
Arg
CCG
[ENA]
¡û
>W1711503530
MKTR01000024
Actinomycetota
Microbacterium sp. 67-17 [MKTR]
269575
269502
-
Arg
CCG
[ENA]
¡û
>C171073382
CP018134
Actinomycetota
Microbacterium paludicola CC3 [CP018134]
3288162
3288087
-
Arg
CCG
-
¡û
>WENV180878638
ODLX01001721
[ODLX] human metagenome; G_DNA_R_Retroauricular crease
1013
940
-
Arg
CCG
[ENA]
¢þ
>W141223172
BADA01000159
Actinomycetota
Microbacterium sp. B19 [BADA]
1418
1493
+
Arg
CCG
[ENA]
¡û
>WENV182643036
OJLS01000161
[OJLS] metagenome; surface
2920
2993
+
Arg
CCG
[ENA]
¢þ
>WENV182646344
OJMA01004130
[OJMA] metagenome; surface
593
666
+
Arg
CCG
[ENA]
¢þ
>WENV182803017
OJUH01000099
[OJUH] human gut metagenome; human gut
441
368
-
Arg
CCG
[ENA]
¢þ
>WENV170378742
CETV01045024
[CETV] marine metagenome genome assembly TARA_133_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
428
503
+
Arg
CCG
[ENA]
¢þ
>WENV170397727
CEUD01087514
[CEUD] marine metagenome genome assembly TARA_137_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
651
724
+
Arg
CCG
[ENA]
¢þ
>WENV170765552
LWDU01037959
[LWDU] hydrothermal vent metagenome; deep sea hydrothermal plume seawater
3793
3866
+
Arg
CCG
[ENA]
¢þ
>WENV170832819
MDSZ01069001
[MDSZ] marine metagenome; seawater
88130
88203
+
Arg
CCG
[ENA]
¢þ
>WENV170920234
MDTF01016223
[MDTF] marine metagenome; seawater
6468
6395
-
Arg
CCG
[ENA]
¢þ
>WENV170926014
MDTG01093532
[MDTG] marine metagenome; seawater
1459
1532
+
Arg
CCG
[ENA]
¢þ
>C181115713
CP025299
Actinomycetota
Microbacterium hominis SJTG1 [CP025299]
2720446
2720519
+
Arg
CCG
-
¡û
>C191056038
CP027929
Actinomycetota
Microbacterium sp. SGAir0570 [CP027929]
2431472
2431547
+
Arg
CCG
-
¡û
>C191144015
CP035494
Actinomycetota
Microbacterium protaetiae DFW100M-13 [CP035494]
2690272
2690347
+
Arg
CCG
-
¡û
>W141739326
JNNT01000007
Actinomycetota
Microbacterium sp. SUBG005 [JNNT]
12637
12564
-
Arg
CCG
[ENA]
¡û
>W1910225170
FMSE01000011
Actinomycetota
Microbacteriaceae bacterium Alg239_V181 [FMSE]
44608
44683
+
Arg
CCG
[ENA]
¡û
>W1910913703
NHRF01000003
Actinomycetota
Microbacterium sp. AISO3 [NHRF]
362162
362237
+
Arg
CCG
[ENA]
¡û
>W1911159646
NPMR01000001
Actinomycetota
Microbacterium sp. Yaish 1 [NPMR]
404969
405044
+
Arg
CCG
[ENA]
¡û
>W1911535354
OLMV01000004
Actinomycetota
Microbacterium timonense Marseille-P5731 [OLMV]
194194
194269
+
Arg
CCG
[ENA]
¡û
>W1911596588
PNHH01000003
Actinomycetota
Corynebacterium kroppenstedtii UMB0869 [PNHH]
128863
128936
+
Arg
CCG
[ENA]
¡û
>W1810538369
QDFT01000041
Actinomycetota
Microbacterium testaceum TPD7010 [QDFT]
738
811
+
Arg
CCG
[ENA]
¡û
>W1810861601
QTTZ01000001
Actinomycetota
Microbacterium trichothecenolyticum ZKA46 [QTTZ]
1277990
1278065
+
Arg
CCG
[ENA]
¡û
>W1511528873
JYIY01000061
Actinomycetota
Microbacterium ginsengisoli DSM 18659 [JYIY]
3197
3270
+
Arg
CCG
[ENA]
¡û
>C161090884
CP015810
Actinomycetota
Microbacterium chocolatum SIT 101 [CP015810]
1683263
1683188
-
Arg
CCG
-
¡û
>W1610074018
BCWI01000021
Actinomycetota
Microbacterium hominis NBRC 15708 [BCWI]
66501
66574
+
Arg
CCG
[ENA]
¡û
>W121061224
AJGR01000114
Actinomycetota
Microbacterium laevaniformans OR221 [AJGR]
286808
286735
-
Arg
CCG
[ENA]
¡û
>W1610590740
LDRR01000011
Actinomycetota
Microbacterium testaceum [LDRR]
2864
2937
+
Arg
CCG
[ENA]
¡û
>W1610590815
LDRS01000095
Actinomycetota
Microbacterium testaceum [LDRS]
30289
30216
-
Arg
CCG
[ENA]
¡û
>W1610590898
LDRU01000074
Actinomycetota
Microbacterium testaceum [LDRU]
14506
14579
+
Arg
CCG
[ENA]
¡û
>W1610590941
LDRV01000082
Actinomycetota
Microbacterium testaceum [LDRV]
30279
30206
-
Arg
CCG
[ENA]
¡û
>W1610729095
LMHS01000003
Actinomycetota
Microbacterium sp. Root180 [LMHS]
199530
199605
+
Arg
CCG
[ENA]
¡û
>W1610738979
LMPK01000005
Actinomycetota
Microbacterium sp. Leaf351 [LMPK]
87716
87791
+
Arg
CCG
[ENA]
¡û
>W1610767471
LNQG01000007
Actinomycetota
Microbacterium enclense [LNQG]
154827
154902
+
Arg
CCG
[ENA]
¡û
>W1610871183
LRAD01000042
Actinomycetota
Microbacterium laevaniformans [LRAD]
9237
9310
+
Arg
CCG
[ENA]
¡û
>W1610907125
LSCY01000002
Actinomycetota
Corynebacterium kroppenstedtii [LSCY]
26420
26347
-
Arg
CCG
[ENA]
¡û
>W1611030313
LZEM01000010
Actinomycetota
Microbacterium arborescens [LZEM]
63003
63078
+
Arg
CCG
[ENA]
¡û
>W1710071136
BCWI01000021
Actinomycetota
Microbacterium hominis NBRC 15708 [BCWI]
66501
66574
+
Arg
CCG
[ENA]
¡û
>W1710525075
FNJG01000001
Actinomycetota
Microbacterium sp. ru370.1 [FNJG]
1566312
1566385
+
Arg
CCG
[ENA]
¡û
>W1710534565
FNRY01000001
Actinomycetota
Microbacterium humi [FNRY]
2436365
2436290
-
Arg
CCG
[ENA]
¡û
>W1710597986
FTNQ01000001
Actinomycetota
Microbacterium sp. RURRCA19A [FTNQ]
1039756
1039681
-
Arg
CCG
[ENA]
¡û
>W1710600046
FTPQ01000001
Actinomycetota
Microbacterium sp. RU1D [FTPQ]
1566513
1566586
+
Arg
CCG
[ENA]
¡û
>W1710710020
LDRR01000011
Actinomycetota
Microbacterium testaceum [LDRR]
2864
2937
+
Arg
CCG
[ENA]
¡û
>W1710710178
LDRU01000074
Actinomycetota
Microbacterium testaceum [LDRU]
14506
14579
+
Arg
CCG
[ENA]
¡û
>W1710710221
LDRV01000082
Actinomycetota
Microbacterium testaceum [LDRV]
30279
30206
-
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK