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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.254697 (93 seq.)
>W1712041394
NFLA01000018
Bacillota
Erysipelatoclostridium sp. An15 [NFLA]
18243
18318
+
Lys
TTT
[ENA]
¡û
>W1712041406
NFLA01000028
Bacillota
Erysipelatoclostridium sp. An15 [NFLA]
38265
38190
-
Lys
TTT
[ENA]
¡û
>W1712041421
NFLA01000101
Bacillota
Erysipelatoclostridium sp. An15 [NFLA]
1882
1807
-
Lys
TTT
[ENA]
¡û
>WENV180122465
OASU01000211
[OASU] human gut metagenome; faeces
22563
22488
-
Lys
TTT
[ENA]
¢þ
>WENV180129256
OATC01000178
[OATC] human gut metagenome; faeces
22569
22494
-
Lys
TTT
[ENA]
¢þ
>WENV180156594
OAUV01043895
[OAUV] human gut metagenome; faeces
348
423
+
Lys
TTT
[ENA]
¢þ
>WENV180305821
OBJO01004924
[OBJO] human gut metagenome; human gut
857
932
+
Lys
TTT
[ENA]
¢þ
>WENV180411984
OBUZ01009211
[OBUZ] human gut metagenome; faeces
371
446
+
Lys
TTT
[ENA]
¢þ
>WENV180413609
OBVB01021200
[OBVB] human gut metagenome; faeces
219
144
-
Lys
TTT
[ENA]
¢þ
>WENV180420012
OBVO01000261
[OBVO] human gut metagenome; faeces
18839
18914
+
Lys
TTT
[ENA]
¢þ
>WENV180458382
OBXV01023881
[OBXV] human gut metagenome; faeces
189
114
-
Lys
TTT
[ENA]
¢þ
>WENV180480531
OBZD01004924
[OBZD] human gut metagenome; faeces
2108
2033
-
Lys
TTT
[ENA]
¢þ
>WENV180487410
OBZO01002215
[OBZO] human gut metagenome; faeces
231
306
+
Lys
TTT
[ENA]
¢þ
>WENV180490118
OBZT01006968
[OBZT] human gut metagenome; faeces
571
646
+
Lys
TTT
[ENA]
¢þ
>WENV180503122
OCAM01002088
[OCAM] human gut metagenome; faeces
6971
6896
-
Lys
TTT
[ENA]
¢þ
>WENV180504193
OCAN01000779
[OCAN] human gut metagenome; faeces
22599
22524
-
Lys
TTT
[ENA]
¢þ
>WENV180534707
OCHM01041147
[OCHM] human gut metagenome; human gut
386
311
-
Lys
TTT
[ENA]
¢þ
>WENV180540283
OCHQ01014471
[OCHQ] human gut metagenome; human gut
821
896
+
Lys
TTT
[ENA]
¢þ
>WENV180605001
OCPS01065400
[OCPS] human gut metagenome; human gut
324
399
+
Lys
TTT
[ENA]
¢þ
>WENV180685043
OCVV012866434
[OCVV] gut metagenome; gut
165
240
+
Lys
TTT
[ENA]
¢þ
>WENV180685049
OCVV012866434
[OCVV] gut metagenome; gut
165
240
+
Lys
TTT
[ENA]
¢þ
>WENV180685853
OCVV012877996
[OCVV] gut metagenome; gut
87
12
-
Lys
TTT
[ENA]
¢þ
>WENV180685858
OCVV012877996
[OCVV] gut metagenome; gut
87
12
-
Lys
TTT
[ENA]
¢þ
>WENV180686771
OCVV012895925
[OCVV] gut metagenome; gut
181
106
-
Lys
TTT
[ENA]
¢þ
>WENV180686773
OCVV012895925
[OCVV] gut metagenome; gut
181
106
-
Lys
TTT
[ENA]
¢þ
>WENV181417544
OGCM01000273
[OGCM] human gut metagenome; human gut
54305
54230
-
Lys
TTT
[ENA]
¢þ
>WENV181418022
OGCM01001271
[OGCM] human gut metagenome; human gut
1171
1096
-
Lys
TTT
[ENA]
¢þ
>WENV181425826
OGCQ01001279
[OGCQ] human gut metagenome; human gut
31564
31489
-
Lys
TTT
[ENA]
¢þ
>WENV181446506
OGDT01015135
[OGDT] metagenome; Human gut stool
113
38
-
Lys
TTT
[ENA]
¢þ
>WENV181459036
OGEK01001845
[OGEK] metagenome; Human gut stool
11664
11589
-
Lys
TTT
[ENA]
¢þ
>WENV181555531
OGIT01007827
[OGIT] metagenome; Human gut stool
1581
1506
-
Lys
TTT
[ENA]
¢þ
>WENV181794520
OGRS01000811
[OGRS] human gut metagenome; faeces
23336
23411
+
Lys
TTT
[ENA]
¢þ
>WENV181949788
OGZF01008716
[OGZF] human gut metagenome; faeces
144
69
-
Lys
TTT
[ENA]
¢þ
>WENV181976376
OHAD01000960
[OHAD] human gut metagenome; faeces
13179
13104
-
Lys
TTT
[ENA]
¢þ
>WENV182117983
OHJF01000453
[OHJF] human gut metagenome; feces
23312
23384
+
Lys
TTT
[ENA]
¢þ
>WENV182126297
OHJT01005939
[OHJT] human gut metagenome; feces
481
556
+
Lys
TTT
[ENA]
¢þ
>WENV182170989
OHMW01021994
[OHMW] human gut metagenome; feces
781
706
-
Lys
TTT
[ENA]
¢þ
>WENV182174989
OHNF01048277
[OHNF] human gut metagenome; feces
200
275
+
Lys
TTT
[ENA]
¢þ
>WENV182188053
OHOL01008325
[OHOL] human gut metagenome; feces
671
596
-
Lys
TTT
[ENA]
¢þ
>WENV182303235
OHWU01004646
[OHWU] human gut metagenome; feces
1270
1195
-
Lys
TTT
[ENA]
¢þ
>WENV182329076
OHZD01005294
[OHZD] human gut metagenome; feces
86
161
+
Lys
TTT
[ENA]
¢þ
>WENV182341292
OIAF01021729
[OIAF] human gut metagenome; feces
392
467
+
Lys
TTT
[ENA]
¢þ
>WENV182373563
OICZ01005902
[OICZ] human gut metagenome; feces
1181
1256
+
Lys
TTT
[ENA]
¢þ
>WENV182458608
OINI01023988
[OINI] human gut metagenome; human gut
634
559
-
Lys
TTT
[ENA]
¢þ
>WENV182470897
OIPH01028835
[OIPH] human gut metagenome; human gut
383
308
-
Lys
TTT
[ENA]
¢þ
>WENV182612095
OJJX01035768
[OJJX] metagenome; faeces
330
405
+
Lys
TTT
[ENA]
¢þ
>WENV182613745
OJKA01009506
[OJKA] metagenome; faeces
1307
1382
+
Lys
TTT
[ENA]
¢þ
>WENV182613898
OJKA01029296
[OJKA] metagenome; faeces
521
596
+
Lys
TTT
[ENA]
¢þ
>WENV182670258
OJNK01028817
[OJNK] human gut metagenome; human gut
437
362
-
Lys
TTT
[ENA]
¢þ
>WENV182720406
OJPN01011192
[OJPN] human gut metagenome; stool sample
1428
1353
-
Lys
TTT
[ENA]
¢þ
>WENV182763601
OJRO01026805
[OJRO] human gut metagenome; stool sample
228
303
+
Lys
TTT
[ENA]
¢þ
>WENV182843197
OKIK01003800
[OKIK] human gut metagenome; human gut
1119
1044
-
Lys
TTT
[ENA]
¢þ
>WENV182987498
OLAC01006223
[OLAC] human gut metagenome; human gut
334
259
-
Lys
TTT
[ENA]
¢þ
>WENV183135781
OLOE01012366
[OLOE] human gut metagenome; faeces
838
763
-
Lys
TTT
[ENA]
¢þ
>WENV183136795
OLOG01000220
[OLOG] human gut metagenome; faeces
34073
34148
+
Lys
TTT
[ENA]
¢þ
>WENV183288754
OLSG01000360
[OLSG] human gut metagenome; faeces
31642
31567
-
Lys
TTT
[ENA]
¢þ
>WENV183295274
OLSL01000605
[OLSL] human gut metagenome; faeces
32961
33036
+
Lys
TTT
[ENA]
¢þ
>WENV183314140
OLVR01000782
[OLVR] human gut metagenome; faeces
36749
36824
+
Lys
TTT
[ENA]
¢þ
>WENV183425372
OMBK01007266
[OMBK] human gut metagenome; feces
2509
2584
+
Lys
TTT
[ENA]
¢þ
>WENV183531844
OOAC01007711
[OOAC] human gut metagenome; human gut
1681
1756
+
Lys
TTT
[ENA]
¢þ
>WENV183557916
OOBP01024825
[OOBP] human gut metagenome; human gut
869
794
-
Lys
TTT
[ENA]
¢þ
>WENV183594526
OODB01052128
[OODB] human gut metagenome; human gut
258
183
-
Lys
TTT
[ENA]
¢þ
>WENV183602887
OODK01000292
[OODK] human gut metagenome; human gut
23788
23863
+
Lys
TTT
[ENA]
¢þ
>WENV183657207
OQWI01004590
[OQWI] human gut metagenome; human gut
686
761
+
Lys
TTT
[ENA]
¢þ
>C191007188
AP019309
Bacillota
Intestinibaculum porci SG0102 [AP019309]
430797
430872
+
Lys
TTT
-
¡û
>C191007190
AP019309
Bacillota
Intestinibaculum porci SG0102 [AP019309]
430982
431057
+
Lys
TTT
-
¡û
>C191007239
AP019309
Bacillota
Intestinibaculum porci SG0102 [AP019309]
2166188
2166113
-
Lys
TTT
-
¡û
>C191183940
CP040902
Bacillota
Longibaculum sp. KGMB06250 [CP040902]
308915
308990
+
Lys
TTT
-
¡û
>C191183946
CP040902
Bacillota
Longibaculum sp. KGMB06250 [CP040902]
369576
369651
+
Lys
TTT
-
¡û
>C191183968
CP040902
Bacillota
Longibaculum sp. KGMB06250 [CP040902]
1070368
1070443
+
Lys
TTT
-
¡û
>W141558898
JHWI01000003
Bacillota
Kandleria vitulina MC3001 [JHWI]
59890
59965
+
Lys
TTT
[ENA]
¡û
>W141558916
JHWI01000007
Bacillota
Kandleria vitulina MC3001 [JHWI]
108930
108855
-
Lys
TTT
[ENA]
¡û
>W141558918
JHWI01000007
Bacillota
Kandleria vitulina MC3001 [JHWI]
108740
108665
-
Lys
TTT
[ENA]
¡û
>W141558920
JHWI01000007
Bacillota
Kandleria vitulina MC3001 [JHWI]
108551
108476
-
Lys
TTT
[ENA]
¡û
>W141559754
JHXA01000008
Bacillota
Kandleria vitulina WCE2011 [JHXA]
53252
53327
+
Lys
TTT
[ENA]
¡û
>W1911539542
ONGW01000076
Bacillota
Kandleria vitulina [ONGW]
100
175
+
Lys
TTT
[ENA]
¡û
>W1810404848
PYLQ01000010
Bacillota
Faecalibacillus intestinalis SNUG30099 [PYLQ]
87299
87224
-
Lys
TTT
[ENA]
¡û
>W1810404880
PYLQ01000023
Bacillota
Faecalibacillus intestinalis SNUG30099 [PYLQ]
11350
11425
+
Lys
TTT
[ENA]
¡û
>W1810404891
PYLQ01000031
Bacillota
Faecalibacillus intestinalis SNUG30099 [PYLQ]
22299
22224
-
Lys
TTT
[ENA]
¡û
>W1810802496
QRQB01000020
Bacillota
Coprobacillus sp. AF33-1AC [QRQB]
12721
12646
-
Lys
TTT
[ENA]
¡û
>W1810864741
QTWI01000005
Bacillota
Coprobacillus sp. AF24-1LB [QTWI]
89106
89031
-
Lys
TTT
[ENA]
¡û
>W1810864747
QTWI01000005
Bacillota
Coprobacillus sp. AF24-1LB [QTWI]
52288
52213
-
Lys
TTT
[ENA]
¡û
>W1810872825
QUEA01000021
Bacillota
Coprobacillus sp. AF34-1BH [QUEA]
15831
15906
+
Lys
TTT
[ENA]
¡û
>W1810878915
QUIN01000019
Bacillota
Erysipelatoclostridium sp. AM42-17 [QUIN]
47132
47207
+
Lys
TTT
[ENA]
¡û
>W1810878922
QUIN01000019
Bacillota
Erysipelatoclostridium sp. AM42-17 [QUIN]
12727
12652
-
Lys
TTT
[ENA]
¡û
>W1610528670
JQBL01000004
Bacillota
Kandleria vitulina DSM 20405 [JQBL]
75
150
+
Lys
TTT
[ENA]
¡û
>W1610528672
JQBL01000004
Bacillota
Kandleria vitulina DSM 20405 [JQBL]
266
341
+
Lys
TTT
[ENA]
¡û
>WENV084293
BAAZ01010276
Gut microbiome of Human (healthy human sample F2-X, Child, Male)
583
660
+
Lys
TTT
[ENA]
>W1710521877
FNGT01000001
Bacillota
Kandleria vitulina [FNGT]
20603
20678
+
Lys
TTT
[ENA]
¡û
>W1710521879
FNGT01000001
Bacillota
Kandleria vitulina [FNGT]
20789
20864
+
Lys
TTT
[ENA]
¡û
>W1710542419
FNZD01000002
Bacillota
Kandleria vitulina [FNZD]
215104
215029
-
Lys
TTT
[ENA]
¡û
>W1710630260
JQBL01000004
Bacillota
Kandleria vitulina DSM 20405 [JQBL]
75
150
+
Lys
TTT
[ENA]
¡û
>W1710630262
JQBL01000004
Bacillota
Kandleria vitulina DSM 20405 [JQBL]
266
341
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK