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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.254805 (31 seq.)
>W1710864185
LMFR01000010
Actinomycetota
Microbacterium sp. Root53 [LMFR]
71873
71948
+
Ala
CGC
[ENA]
¡û
>W1710867943
LMIR01000003
Actinomycetota
Agromyces sp. Root81 [LMIR]
25240
25165
-
Ala
CGC
[ENA]
¡û
>W1710870584
LMKQ01000001
Actinomycetota
Agromyces sp. Leaf222 [LMKQ]
1450534
1450609
+
Ala
CGC
[ENA]
¡û
>W1710879774
LMRW01000028
Actinomycetota
Agromyces sp. Soil535 [LMRW]
189571
189646
+
Ala
CGC
[ENA]
¡û
>W1711003289
LQGY01000011
Actinomycetota
Agromyces sp. NDB4Y10 [LQGY]
22263
22190
-
Ala
CGC
[ENA]
¡û
>W131191135
ASHR01000005
Actinomycetota
Agrococcus pavilionensis RW1 [ASHR]
1524
1449
-
Ala
CGC
[ENA]
¡û
>W131217924
ATXF01000007
Actinomycetota
Agromyces italicus DSM 16388 [ATXF]
322720
322795
+
Ala
CGC
[ENA]
¡û
>W131217975
ATXG01000016
Actinomycetota
Agromyces subbeticus DSM 16689 [ATXG]
22053
21978
-
Ala
CGC
[ENA]
¡û
>W131234899
AULD01000012
Actinomycetota
Agrococcus lahaulensis DSM 17612 [AULD]
124915
124990
+
Ala
CGC
[ENA]
¡û
>W1711505410
MKVM01000001
Actinomycetota
Micrococcales bacterium 72-143 [MKVM]
1403246
1403171
-
Ala
CGC
[ENA]
¡û
>WENV180690757
OCZS010023147
[OCZS] soil metagenome; soil
1234
1308
+
Ala
CGC
[ENA]
¢þ
>C181169620
CP028913
Actinomycetota
Agromyces badenianii MF30-A [CP028913]
685831
685906
+
Ala
CGC
-
¡û
>C191056085
CP027942
Actinomycetota
Agrococcus sp. SGAir0287 [CP027942]
2288697
2288622
-
Ala
CGC
-
¡û
>C191092536
CP032630
Actinomycetota
Protaetiibacter intestinalis 2DFWR-13 [CP032630]
666208
666134
-
Ala
CGC
-
¡û
>C191130428
CP034753
Actinomycetota
Agromyces sp. LHK192 [CP034753]
2860336
2860261
-
Ala
CGC
-
¡û
>C191143817
CP035491
Actinomycetota
Agromyces protaetiae FW100M-8 [CP035491]
1780501
1780575
+
Ala
CGC
-
¡û
>C191183335
CP040872
Actinomycetota
Agromyces laixinhei HY052 [CP040872]
2953987
2953912
-
Ala
CGC
-
¡û
>W1910231895
FPEG01000001
Actinomycetota
Agrococcus sp. Marseille-P2731 [FPEG]
433814
433888
+
Ala
CGC
[ENA]
¡û
>W1910373892
FUHU01000043
Actinomycetota
Agrococcus casei LMG 22410 [FUHU]
106322
106247
-
Ala
CGC
[ENA]
¡û
>W1910832074
MYFP01000087
Actinomycetota
Microbacterium sp. MEC084 [MYFP]
1277
1351
+
Ala
CGC
[ENA]
¡û
>W1810090135
PGFF01000001
Actinomycetota
Diaminobutyricimonas aerilata DSM 27393 [PGFF]
2550124
2550049
-
Ala
CGC
[ENA]
¡û
>W1810569012
QEFA01000003
Actinomycetota
Agromyces badenianii 845 [QEFA]
28800
28725
-
Ala
CGC
[ENA]
¡û
>W1810860822
QTTL01000001
Actinomycetota
Agromyces sp. OV429 [QTTL]
1593405
1593480
+
Ala
CGC
[ENA]
¡û
>C161063190
CP013979
Actinomycetota
Agromyces aureus AR33 [CP013979]
1515710
1515785
+
Ala
CGC
[Ensembl]
¡û
>W1610726531
LMFR01000010
Actinomycetota
Microbacterium sp. Root53 [LMFR]
71873
71948
+
Ala
CGC
[ENA]
¡û
>W1610730289
LMIR01000003
Actinomycetota
Agromyces sp. Root81 [LMIR]
25240
25165
-
Ala
CGC
[ENA]
¡û
>W1610732930
LMKQ01000001
Actinomycetota
Agromyces sp. Leaf222 [LMKQ]
1450534
1450609
+
Ala
CGC
[ENA]
¡û
>W1610742120
LMRW01000028
Actinomycetota
Agromyces sp. Soil535 [LMRW]
189571
189646
+
Ala
CGC
[ENA]
¡û
>W1610853854
LQGY01000011
Actinomycetota
Agromyces sp. NDB4Y10 [LQGY]
22263
22190
-
Ala
CGC
[ENA]
¡û
>W1710575382
FOZD01000001
Actinomycetota
Agromyces sp. CF514 [FOZD]
1700815
1700890
+
Ala
CGC
[ENA]
¡û
>W1710594704
FSRJ01000005
Actinomycetota
Agromyces cerinus subsp. cerinus [FSRJ]
25769
25694
-
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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