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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.254820 (86 seq.)
>W131161596
AQXW01000002
Actinomycetota
Demetria terragena DSM 11295 [AQXW]
118674
118749
+
Val
TAC
[ENA]
¡û
>W1711698132
MSKY01000004
Actinomycetota
Actinomyces naeslundii [MSKY]
324938
324863
-
Val
TAC
[ENA]
¡û
>W1711698212
MSKZ01000023
Actinomycetota
Actinomyces naeslundii [MSKZ]
8295
8370
+
Val
TAC
[ENA]
¡û
>W1711698234
MSLA01000003
Actinomycetota
Actinomyces naeslundii [MSLA]
9021
8946
-
Val
TAC
[ENA]
¡û
>W1711698322
MSLB01000034
Actinomycetota
Actinomyces naeslundii [MSLB]
42359
42284
-
Val
TAC
[ENA]
¡û
>W1711706689
MSRH01000018
Actinomycetota
Actinomyces naeslundii [MSRH]
63402
63477
+
Val
TAC
[ENA]
¡û
>W1711706844
MSRK01000046
Actinomycetota
Actinomyces naeslundii [MSRK]
35296
35221
-
Val
TAC
[ENA]
¡û
>W1711706880
MSRL01000020
Actinomycetota
Actinomyces naeslundii [MSRL]
89621
89696
+
Val
TAC
[ENA]
¡û
>W1711706929
MSRM01000028
Actinomycetota
Actinomyces naeslundii [MSRM]
26292
26367
+
Val
TAC
[ENA]
¡û
>W1711706956
MSRN01000001
Actinomycetota
Actinomyces naeslundii [MSRN]
104938
104863
-
Val
TAC
[ENA]
¡û
>W1711707027
MSRO01000020
Actinomycetota
Actinomyces naeslundii [MSRO]
26276
26351
+
Val
TAC
[ENA]
¡û
>W1711707055
MSRP01000002
Actinomycetota
Actinomyces naeslundii [MSRP]
61264
61339
+
Val
TAC
[ENA]
¡û
>W1711707130
MSRQ01000028
Actinomycetota
Actinomyces naeslundii [MSRQ]
60280
60355
+
Val
TAC
[ENA]
¡û
>W1711707155
MSRR01000003
Actinomycetota
Actinomyces naeslundii [MSRR]
61282
61357
+
Val
TAC
[ENA]
¡û
>W1711707215
MSRS01000012
Actinomycetota
Actinomyces naeslundii [MSRS]
72967
73042
+
Val
TAC
[ENA]
¡û
>W1711707284
MSRT01000019
Actinomycetota
Actinomyces naeslundii [MSRT]
26264
26339
+
Val
TAC
[ENA]
¡û
>W1711707323
MSRU01000018
Actinomycetota
Actinomyces naeslundii [MSRU]
21796
21721
-
Val
TAC
[ENA]
¡û
>W1711724143
MTPX01000035
Actinomycetota
Actinomyces ruminis CtC 72 [MTPX]
5733
5808
+
Val
TAC
[ENA]
¡û
>W131221362
AUAK01000004
Actinomycetota
Actinomyces slackii ATCC 49928 [AUAK]
25930
25855
-
Val
TAC
[ENA]
¡û
>W141024121
AKGF01000030
Actinomycetota
Actinomyces timonensis DSM 23838 [AKGF]
36730
36657
-
Val
TAC
[ENA]
¡û
>WENV180731468
ODGW01000847
[ODGW] human metagenome; G_DNA_Supragingival plaque
993
1068
+
Val
TAC
[ENA]
¢þ
>WENV180732361
ODGY01000244
[ODGY] human metagenome; G_DNA_Supragingival plaque
10044
10119
+
Val
TAC
[ENA]
¢þ
>WENV180733931
ODGZ01001443
[ODGZ] human metagenome; G_DNA_Supragingival plaque
4139
4064
-
Val
TAC
[ENA]
¢þ
>WENV180734435
ODGZ01008533
[ODGZ] human metagenome; G_DNA_Supragingival plaque
2881
2806
-
Val
TAC
[ENA]
¢þ
>WENV180736050
ODHB01003809
[ODHB] human metagenome; G_DNA_Supragingival plaque
2739
2814
+
Val
TAC
[ENA]
¢þ
>WENV180751279
ODHS01037904
[ODHS] human metagenome; G_DNA_Supragingival plaque
461
536
+
Val
TAC
[ENA]
¢þ
>WENV180754821
ODHU01001222
[ODHU] human metagenome; G_DNA_Supragingival plaque
5961
5886
-
Val
TAC
[ENA]
¢þ
>WENV180764595
ODIB01000083
[ODIB] human metagenome; G_DNA_Supragingival plaque
20406
20481
+
Val
TAC
[ENA]
¢þ
>WENV180778032
ODIM01000308
[ODIM] human metagenome; G_DNA_Supragingival plaque
3778
3853
+
Val
TAC
[ENA]
¢þ
>WENV180778343
ODIM01003784
[ODIM] human metagenome; G_DNA_Supragingival plaque
3437
3362
-
Val
TAC
[ENA]
¢þ
>WENV180781473
ODIP01000213
[ODIP] human metagenome; G_DNA_Supragingival plaque
8288
8363
+
Val
TAC
[ENA]
¢þ
>WENV180788178
ODIS01036947
[ODIS] human metagenome; G_DNA_Supragingival plaque
368
293
-
Val
TAC
[ENA]
¢þ
>WENV180795904
ODJB01000546
[ODJB] human metagenome; G_DNA_Supragingival plaque
4606
4681
+
Val
TAC
[ENA]
¢þ
>WENV180800713
ODJD01000560
[ODJD] human metagenome; G_DNA_Supragingival plaque
9251
9326
+
Val
TAC
[ENA]
¢þ
>WENV180805127
ODJG01067303
[ODJG] human metagenome; G_DNA_Supragingival plaque
257
182
-
Val
TAC
[ENA]
¢þ
>WENV180814299
ODJO01012267
[ODJO] human metagenome; G_DNA_Supragingival plaque
1005
1080
+
Val
TAC
[ENA]
¢þ
>WENV180822246
ODJT01000121
[ODJT] human metagenome; G_DNA_Supragingival plaque
20370
20445
+
Val
TAC
[ENA]
¢þ
>WENV180822948
ODJW01001131
[ODJW] human metagenome; G_DNA_Supragingival plaque
1356
1431
+
Val
TAC
[ENA]
¢þ
>WENV180823743
ODJW01139528
[ODJW] human metagenome; G_DNA_Supragingival plaque
79
4
-
Val
TAC
[ENA]
¢þ
>WENV180833305
ODKC01027518
[ODKC] human metagenome; G_DNA_Supragingival plaque
642
717
+
Val
TAC
[ENA]
¢þ
>WENV180834268
ODKD01008666
[ODKD] human metagenome; G_DNA_Supragingival plaque
274
199
-
Val
TAC
[ENA]
¢þ
>WENV180847614
ODKT01119489
[ODKT] human metagenome; G_DNA_Supragingival plaque
271
344
+
Val
TAC
[ENA]
¢þ
>WENV180859269
ODLD01000174
[ODLD] human metagenome; G_DNA_Supragingival plaque
40472
40397
-
Val
TAC
[ENA]
¢þ
>WENV180860015
ODLD01012198
[ODLD] human metagenome; G_DNA_Supragingival plaque
1412
1487
+
Val
TAC
[ENA]
¢þ
>WENV180881466
ODMA01000521
[ODMA] human metagenome; G_DNA_Supragingival plaque
6003
6078
+
Val
TAC
[ENA]
¢þ
>WENV180888276
ODMN01000371
[ODMN] human metagenome; G_DNA_Supragingival plaque
11509
11584
+
Val
TAC
[ENA]
¢þ
>WENV180927766
ODTM01003486
[ODTM] human metagenome; G_DNA_Supragingival plaque
1005
1080
+
Val
TAC
[ENA]
¢þ
>WENV180928228
ODTM01022790
[ODTM] human metagenome; G_DNA_Supragingival plaque
1004
1079
+
Val
TAC
[ENA]
¢þ
>WENV180934737
ODTS01001958
[ODTS] human metagenome; G_DNA_Subgingival plaque
3788
3863
+
Val
TAC
[ENA]
¢þ
>WENV180938505
ODTX01002503
[ODTX] human metagenome; G_DNA_Supragingival plaque
1476
1401
-
Val
TAC
[ENA]
¢þ
>WENV180939551
ODTX01049810
[ODTX] human metagenome; G_DNA_Supragingival plaque
467
392
-
Val
TAC
[ENA]
¢þ
>WENV180958345
ODUL01003204
[ODUL] human metagenome; G_DNA_Supragingival plaque
1864
1939
+
Val
TAC
[ENA]
¢þ
>WENV180964478
ODUO01003246
[ODUO] human metagenome; G_DNA_Supragingival plaque
4273
4198
-
Val
TAC
[ENA]
¢þ
>WENV180972860
ODUW01000358
[ODUW] human metagenome; G_DNA_Supragingival plaque
16661
16586
-
Val
TAC
[ENA]
¢þ
>WENV180980468
ODVE01000238
[ODVE] human metagenome; G_DNA_Supragingival plaque
11367
11442
+
Val
TAC
[ENA]
¢þ
>WENV180981052
ODVE01005865
[ODVE] human metagenome; G_DNA_Supragingival plaque
462
537
+
Val
TAC
[ENA]
¢þ
>WENV180998616
ODVT01000947
[ODVT] human metagenome; G_DNA_Buccal mucosa
7476
7401
-
Val
TAC
[ENA]
¢þ
>WENV180999151
ODVT01007308
[ODVT] human metagenome; G_DNA_Buccal mucosa
506
581
+
Val
TAC
[ENA]
¢þ
>WENV181009607
ODWE01115800
[ODWE] human metagenome; G_DNA_Supragingival plaque
75
1
-
Val
TAC
[ENA]
¢þ
>WENV181049672
ODYD01001233
[ODYD] human metagenome; G_DNA_Supragingival plaque
3743
3818
+
Val
TAC
[ENA]
¢þ
>WENV181064727
ODYP01085143
[ODYP] human metagenome; G_DNA_Supragingival plaque
100
25
-
Val
TAC
[ENA]
¢þ
>WENV181066626
ODZI01000571
[ODZI] human metagenome; G_DNA_Supragingival plaque
7476
7401
-
Val
TAC
[ENA]
¢þ
>WENV181076561
OEAP01007503
[OEAP] human metagenome; G_DNA_Supragingival plaque
462
537
+
Val
TAC
[ENA]
¢þ
>WENV181080844
OEAS01089941
[OEAS] human metagenome; G_DNA_Supragingival plaque
439
364
-
Val
TAC
[ENA]
¢þ
>WENV181137402
OEGJ01003098
[OEGJ] human metagenome; G_DNA_Supragingival plaque
5240
5165
-
Val
TAC
[ENA]
¢þ
>WENV181160466
OEIK01009817
[OEIK] human metagenome; G_DNA_Supragingival plaque
2359
2284
-
Val
TAC
[ENA]
¢þ
>WENV181178143
OEJS01067141
[OEJS] human metagenome; G_DNA_Supragingival plaque
186
259
+
Val
TAC
[ENA]
¢þ
>WENV181179455
OEJT01005270
[OEJT] human metagenome; G_DNA_Supragingival plaque
855
780
-
Val
TAC
[ENA]
¢þ
>WENV183509757
OMHJ01009759
[OMHJ] human oral metagenome; human oral
136
211
+
Val
TAC
[ENA]
¢þ
>WENV183510603
OMHP01002473
[OMHP] human oral metagenome; human oral
76
150
+
Val
TAC
[ENA]
¢þ
>C181160819
CP027862
Actinomycetota
Actinomyces sp. Z16 [CP027862]
1986694
1986621
-
Val
TAC
-
¡û
>C191030399
CP025228
Actinomycetota
Actinomyces qiguomingii 410 [CP025228]
2079834
2079761
-
Val
TAC
-
¡û
>C191164742
CP039292
Actinomycetota
Actinomyces procaprae dk561 [CP039292]
1782857
1782784
-
Val
TAC
-
¡û
>C191208956
LR134363
Actinomycetota
Actinomyces slackii NCTC11923 [LR134363]
2512123
2512048
-
Val
TAC
-
¡û
>W1910281463
FQTT01000012
Actinomycetota
Actinomyces glycerinitolerans [FQTT]
168649
168722
+
Val
TAC
[ENA]
¡û
>W1911798509
QYRR01000001
Actinomycetota
Actinomyces sp. 2119 [QYRR]
50431
50505
+
Val
TAC
[ENA]
¡û
>W1810191444
PKKP01000007
Actinomycetota
Actinomyces naeslundii UMB0181 [PKKP]
60224
60299
+
Val
TAC
[ENA]
¡û
>W1810238730
PPPL01000061
Actinomycetota
Actinomyces qiguomingii 553 [PPPL]
87835
87908
+
Val
TAC
[ENA]
¡û
>W1810705147
QMIN01000076
Actinomycetota
Actinomyces sp. Z5 [QMIN]
66725
66652
-
Val
TAC
[ENA]
¡û
>W1810705186
QMIO01000008
Actinomycetota
Actinomyces sp. Z3 [QMIO]
85546
85619
+
Val
TAC
[ENA]
¡û
>W11156677
AFBL01000003
Actinomycetota
Actinomyces sp. oral taxon 170 oral taxon 170 str. F0386 [AFBL]
68955
68880
-
Val
TAC
[ENA]
¡û
>W11171070
AFQC01000049
Actinomycetota
Actinomyces sp. oral taxon 448 oral taxon 448 str. F0400 [AFQC]
86629
86704
+
Val
TAC
[ENA]
¡û
>C161068923
CP014228
Actinomycetota
Actinomyces radicidentis CCUG 36733 [CP014228]
2297189
2297264
+
Val
TAC
[Ensembl]
¡û
>W121111460
ALJK01000141
Actinomycetota
Actinomyces naeslundii str. Howell 279 [ALJK]
3153
3228
+
Val
TAC
[ENA]
¡û
>W1710523230
FNHU01000006
Actinomycetota
Actinomyces ruminicola [FNHU]
192802
192875
+
Val
TAC
[ENA]
¡û
>W1710524140
FNIM01000006
Actinomycetota
Actinomyces ruminicola [FNIM]
115141
115068
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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