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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.254905 (27 seq.)
>W1711091102
LTBC01000008
Bacillota
Moorella mulderi DSM 14980 [LTBC]
77046
76971
-
Ala
CGC
[ENA]
¡û
>W1711352292
MDDB01000007
Bacillota
Moorella thermoacetica [MDDB]
76836
76911
+
Ala
CGC
[ENA]
¡û
>W1711352343
MDDC01000032
Bacillota
Moorella thermoacetica [MDDC]
4413
4488
+
Ala
CGC
[ENA]
¡û
>W1711352395
MDDD01000016
Bacillota
Moorella thermoacetica [MDDD]
5594
5669
+
Ala
CGC
[ENA]
¡û
>W1711352447
MDDE01000011
Bacillota
Moorella thermoacetica [MDDE]
14095
14020
-
Ala
CGC
[ENA]
¡û
>W1711428548
MIHH01000008
Bacillota
Moorella thermoacetica [MIHH]
8666
8591
-
Ala
CGC
[ENA]
¡û
>W1711428599
MIIF01000010
Bacillota
Moorella thermoacetica [MIIF]
103930
104005
+
Ala
CGC
[ENA]
¡û
>C171055172
CP017019
Bacillota
Moorella thermoacetica DSM 103132 [CP017019]
291189
291264
+
Ala
CGC
-
¡û
>C171058942
CP017237
Bacillota
Moorella thermoacetica DSM 103284 [CP017237]
270309
270384
+
Ala
CGC
-
¡û
>C014161
CP000232
Bacillota
Moorella thermoacetica [CP000232]
377277
377352
+
Ala
CGC
[Ensembl]
¡û
>WENV181404226
OGBZ01005196
[OGBZ] sediment metagenome; hot spring sediment
756
831
+
Ala
CGC
[ENA]
¢þ
>W141229802
BARR01000028
Bacillota
Moorella thermoacetica Y72 [BARR]
136332
136407
+
Ala
CGC
[ENA]
¡û
>WENV170676422
LDZR01002604
[LDZR] terrestrial metagenome; oil reservoir sample K2
10046
10121
+
Ala
CGC
[ENA]
¢þ
>WENV170676476
LDZS01000015
[LDZS] terrestrial metagenome; oil reservoir sample K3
15216
15291
+
Ala
CGC
[ENA]
¢þ
>C191073418
CP031054
Bacillota
Moorella thermoacetica 39073-HH [CP031054]
384001
384076
+
Ala
CGC
-
¡û
>W09100957
AADT03000035
Bacillota
Moorella thermoacetica ATCC 39073 [AADT]
3409
3484
+
Ala
CGC
[ENA]
¡û
>W1910180056
BJKN01000001
Bacillota
Moorella sp. E308F [BJKN]
1174602
1174677
+
Ala
CGC
[ENA]
¡û
>W1910180135
BJKO01000001
Bacillota
Moorella sp. E306M [BJKO]
756193
756118
-
Ala
CGC
[ENA]
¡û
>W1810010424
BFFN01000003
Bacillota
Moorella sp. Hama-1 [BFFN]
108764
108839
+
Ala
CGC
[ENA]
¡û
>W1810367292
PVXL01000050
Bacillota
Moorella stamsii DSM 26271 [PVXL]
79459
79534
+
Ala
CGC
[ENA]
¡û
>W1810367311
PVXM01000001
Bacillota
Moorella humiferrea DSM 23265 [PVXM]
12664
12589
-
Ala
CGC
[ENA]
¡û
>C151094347
CP012369
Bacillota
Moorella thermoacetica DSM 521 [CP012369]
289122
289197
+
Ala
CGC
-
¡û
>C151094397
CP012370
Bacillota
Moorella thermoacetica DSM 2955 [CP012370]
376927
377002
+
Ala
CGC
-
¡û
>W1510100261
CELZ01000032
Bacillota
Moorella glycerini NMP [CELZ]
25143
25068
-
Ala
CGC
[ENA]
¡û
>W1510100270
CELZ01000036
Bacillota
Moorella glycerini NMP [CELZ]
55124
55049
-
Ala
CGC
[ENA]
¡û
>W1610925301
LTBC01000008
Bacillota
Moorella mulderi DSM 14980 [LTBC]
77046
76971
-
Ala
CGC
[ENA]
¡û
>W1710081774
BDGJ01000037
Bacillota
Calderihabitans maritimus [BDGJ]
12000
12075
+
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK