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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.25534 (68 seq.)
>W1710785270
LJHS01000012
Alphaproteobacteria
Rhizobium sp. AAP43 [LJHS]
296202
296113
-
Ser
CGA
[ENA]
¡û
>W1710785675
LJIB01000025
Alphaproteobacteria
Rhizobium sp. AAP116 [LJIB]
24858
24947
+
Ser
CGA
[ENA]
¡û
>W1710861528
LMDR01000008
Alphaproteobacteria
Rhizobium sp. Root1240 [LMDR]
101736
101825
+
Ser
CGA
[ENA]
¡û
>W1710863234
LMEY01000003
Alphaproteobacteria
Rhizobium sp. Root1334 [LMEY]
11000
10911
-
Ser
CGA
[ENA]
¡û
>W1710865274
LMGN01000022
Alphaproteobacteria
Rhizobium sp. Root564 [LMGN]
119250
119161
-
Ser
CGA
[ENA]
¡û
>W1710867362
LMIF01000002
Alphaproteobacteria
Rhizobium sp. Root73 [LMIF]
11001
10912
-
Ser
CGA
[ENA]
¡û
>W1710868579
LMJE01000008
Alphaproteobacteria
Rhizobium sp. Root274 [LMJE]
101711
101800
+
Ser
CGA
[ENA]
¡û
>W1710882252
LMTR01000075
Alphaproteobacteria
Hyphomicrobium sulfonivorans [LMTR]
42902
42813
-
Ser
CGA
[ENA]
¡û
>W131036187
ALJF01000009
Alphaproteobacteria
Agrobacterium albertimagni AOL15 [ALJF]
46382
46293
-
Ser
CGA
[ENA]
¡û
>W1711213915
LXKS01000007
Alphaproteobacteria
Agrobacterium tumefaciens [LXKS]
147009
147098
+
Ser
CGA
[ENA]
¡û
>W1711214229
LXKY01000023
Alphaproteobacteria
Agrobacterium tumefaciens [LXKY]
105483
105572
+
Ser
CGA
[ENA]
¡û
>W1711326240
MBFD01000018
Alphaproteobacteria
Agrobacterium vitis [MBFD]
250853
250942
+
Ser
CGA
[ENA]
¡û
>W1711384742
MEDI01000795
Alphaproteobacteria
Kaistia sp. SCN 65-12 [MEDI]
18
107
+
Ser
CGA
[ENA]
¡û
>W1711667169
MRDG01000011
Alphaproteobacteria
Agrobacterium radiobacter tumefaciens [MRDG]
146970
147059
+
Ser
CGA
[ENA]
¡û
>W1711722535
MTKI01000016
Alphaproteobacteria
Agrobacterium tumefaciens [MTKI]
105457
105546
+
Ser
CGA
[ENA]
¡û
>W1711959716
NBZF01000013
Alphaproteobacteria
Agrobacterium tumefaciens [NBZF]
289174
289085
-
Ser
CGA
[ENA]
¡û
>PL171001256
CP016500
Alphaproteobacteria
Agrobacterium sp. RAC06 plasmid:pBSY240_1
107625
107714
+
Ser
CGA
[ENA]
¡û
>C171049823
CP016450
Alphaproteobacteria
Sinorhizobium sp. RAC02 [CP016450]
3328762
3328851
+
Ser
CGA
-
¡û
>W131044407
AMQQ01000033
Alphaproteobacteria
Bradyrhizobium lupini HPC(L) [AMQQ]
89743
89832
+
Ser
CGA
[ENA]
¡û
>WENV180022143
FTFQ01000265
[FTFQ] metagenome; soil
1120
1031
-
Ser
CGA
[ENA]
¢þ
>WENV180031375
FTJO01038200
[FTJO] metagenome; soil
871
960
+
Ser
CGA
[ENA]
¢þ
>WENV180105477
OAPD01069550
[OAPD] marine metagenome; 2010
287
376
+
Ser
CGA
[ENA]
¢þ
>WENV181414332
OGCL01000223
[OGCL] hot springs metagenome; Hot spring water
62348
62437
+
Ser
CGA
[ENA]
¢þ
>WENV181416134
OGCL01054986
[OGCL] hot springs metagenome; Hot spring water
786
875
+
Ser
CGA
[ENA]
¢þ
>W141260940
CCAN010000012
Alphaproteobacteria
Agrobacterium tumefaciens [CCAN]
8800
8711
-
Ser
CGA
[ENA]
¡û
>W141276523
JADW01000004
Alphaproteobacteria
Agrobacterium larrymoorei ATCC 51759 [JADW]
21496
21407
-
Ser
CGA
[ENA]
¡û
>WENV183627375
OOGL01001544
[OOGL] marine metagenome; sea ice
2051
2140
+
Ser
CGA
[ENA]
¢þ
>WENV183692810
ORMF011979582
[ORMF] groundwater metagenome; groundwater
283
372
+
Ser
CGA
[ENA]
¢þ
>WENV183727926
PJTP01006543
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
894
805
-
Ser
CGA
[ENA]
¢þ
>WENV170668323
LADL02002883
[LADL] rock porewater metagenome; Opalinus Clay rock porewater BRC-3 borehole
13780
13691
-
Ser
CGA
[ENA]
¢þ
>WENV170680695
LFEF01011152
[LFEF] freshwater metagenome; waterbloom
6354
6265
-
Ser
CGA
[ENA]
¢þ
>WENV171003569
NNBU01000546
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
68856
68945
+
Ser
CGA
[ENA]
¢þ
>C191097776
CP032927
Alphaproteobacteria
Agrobacterium tumefaciens 1D1460 [CP032926, CP032927]
922642
922553
-
Ser
CGA
-
¡û
>C191098268
CP033023
Alphaproteobacteria
Agrobacterium fabrum 1D132 [CP033022, CP033023]
926618
926529
-
Ser
CGA
-
¡û
>C191098324
CP033028
Alphaproteobacteria
Agrobacterium tumefaciens A6 [CP033027, CP033028]
1014653
1014564
-
Ser
CGA
-
¡û
>C191150386
CP036359
Alphaproteobacteria
Agrobacterium sp. 33MFTa1.1 [CP036358, CP036359]
1108509
1108598
+
Ser
CGA
-
¡û
>C191150387
CP036359
Alphaproteobacteria
Agrobacterium sp. 33MFTa1.1 [CP036358, CP036359]
1118200
1118289
+
Ser
CGA
-
¡û
>C191170933
CP039692
Alphaproteobacteria
Agrobacterium larrymoorei CFBP5473 [CP039691, CP039692]
917684
917773
+
Ser
CGA
-
¡û
>W1910199599
FBWD01000041
Alphaproteobacteria
Agrobacterium deltaense 7 str. RV3 [FBWD]
287478
287389
-
Ser
CGA
[ENA]
¡û
>W1910199646
FBWE01000028
Alphaproteobacteria
Agrobacterium genomosp. 5 5 str. CFBP 6626 [FBWE]
123556
123645
+
Ser
CGA
[ENA]
¡û
>W1910199737
FBWG01000028
Alphaproteobacteria
Agrobacterium deltaense 7 str. Zutra 3/1 Zutra 3-1 [FBWG]
305849
305760
-
Ser
CGA
[ENA]
¡û
>W1910199838
FBWI01000009
Alphaproteobacteria
Agrobacterium fabrum str. J-07 [FBWI]
213219
213308
+
Ser
CGA
[ENA]
¡û
>W1910199889
FBWK01000049
Alphaproteobacteria
Agrobacterium tomkonis 3 str. CFBP 6623 [FBWK]
208437
208348
-
Ser
CGA
[ENA]
¡û
>W1910200046
FCNL01000034
Alphaproteobacteria
Agrobacterium tumefaciens str. B6 [FCNL]
587947
587858
-
Ser
CGA
[ENA]
¡û
>W1910232034
FPEJ01000001
Alphaproteobacteria
Hyphomicrobium sp. NDB2Meth4 [FPEJ]
1155550
1155639
+
Ser
CGA
[ENA]
¡û
>W1910664434
MCAR01000012
Alphaproteobacteria
Agrobacterium deltaense T3F4 [MCAR]
159704
159793
+
Ser
CGA
[ENA]
¡û
>W1810195492
PKRP01000001
Alphaproteobacteria
Rhizobium sp. TH135 [PKRP]
7065
6976
-
Ser
CGA
[ENA]
¡û
>W1810366492
PVWT01000005
Alphaproteobacteria
Agrobacterium pusense S1 [PVWT]
138007
137918
-
Ser
CGA
[ENA]
¡û
>W1810670691
QJRY01000001
Alphaproteobacteria
Rhizobium wuzhouense W44 [QJRY]
864435
864524
+
Ser
CGA
[ENA]
¡û
>W1810670706
QJRY01000003
Alphaproteobacteria
Rhizobium wuzhouense W44 [QJRY]
404242
404153
-
Ser
CGA
[ENA]
¡û
>W1511480684
JWJH01000001
Alphaproteobacteria
Rhizobium nepotum Jul-39 [JWJH]
115872
115961
+
Ser
CGA
[ENA]
¡û
>W1511588820
LBCQ01000005
Alphaproteobacteria
Aquamicrobium sp. LC103 LC103 [LBCQ]
369226
369315
+
Ser
CGA
[ENA]
¡û
>W1511591878
LBHX01000005
Alphaproteobacteria
Agrobacterium sp. LC34 [LBHX]
347995
347906
-
Ser
CGA
[ENA]
¡û
>W1511591879
LBHX01000005
Alphaproteobacteria
Agrobacterium sp. LC34 [LBHX]
337540
337451
-
Ser
CGA
[ENA]
¡û
>C161005638
CP007226
Alphaproteobacteria
Agrobacterium tumefaciens LBA4213 (Ach5) [CP007225, CP007226]
1014469
1014380
-
Ser
CGA
-
¡û
>W1610649076
LJHS01000012
Alphaproteobacteria
Rhizobium sp. AAP43 [LJHS]
296202
296113
-
Ser
CGA
[ENA]
¡û
>W1610649481
LJIB01000025
Alphaproteobacteria
Rhizobium sp. AAP116 [LJIB]
24858
24947
+
Ser
CGA
[ENA]
¡û
>W1610723874
LMDR01000008
Alphaproteobacteria
Rhizobium sp. Root1240 [LMDR]
101736
101825
+
Ser
CGA
[ENA]
¡û
>W1610725580
LMEY01000003
Alphaproteobacteria
Rhizobium sp. Root1334 [LMEY]
11000
10911
-
Ser
CGA
[ENA]
¡û
>W1610727620
LMGN01000022
Alphaproteobacteria
Rhizobium sp. Root564 [LMGN]
119250
119161
-
Ser
CGA
[ENA]
¡û
>W1610729708
LMIF01000002
Alphaproteobacteria
Rhizobium sp. Root73 [LMIF]
11001
10912
-
Ser
CGA
[ENA]
¡û
>W1610730925
LMJE01000008
Alphaproteobacteria
Rhizobium sp. Root274 [LMJE]
101711
101800
+
Ser
CGA
[ENA]
¡û
>W1610744178
LMTR01000075
Alphaproteobacteria
Hyphomicrobium sulfonivorans [LMTR]
42902
42813
-
Ser
CGA
[ENA]
¡û
>W1611000919
LXKS01000007
Alphaproteobacteria
Agrobacterium tumefaciens [LXKS]
147009
147098
+
Ser
CGA
[ENA]
¡û
>W1611001233
LXKY01000023
Alphaproteobacteria
Agrobacterium tumefaciens [LXKY]
105483
105572
+
Ser
CGA
[ENA]
¡û
>W1710561953
FOON01000004
Alphaproteobacteria
Ensifer sp. OV372 [FOON]
168164
168075
-
Ser
CGA
[ENA]
¡û
>W1710596564
FTMQ01000014
Alphaproteobacteria
Rhizobium sp. RU33A [FTMQ]
13351
13440
+
Ser
CGA
[ENA]
¡û
>W1710606406
FWXU01000009
Alphaproteobacteria
Rhizobium sp. RU36D [FWXU]
3673
3584
-
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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