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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.25577 (42 seq.)
>W1710860543
LMCY01000043
Betaproteobacteria
Massilia sp. Root335 [LMCY]
239608
239697
+
Ser
TGA
[ENA]
¡û
>W1710861063
LMDJ01000012
Betaproteobacteria
Massilia sp. Root351 [LMDJ]
526810
526721
-
Ser
TGA
[ENA]
¡û
>W1710871774
LMLM01000004
Betaproteobacteria
Duganella sp. Leaf61 [LMLM]
64515
64604
+
Ser
TGA
[ENA]
¡û
>W1710874775
LMNW01000031
Betaproteobacteria
Duganella sp. Leaf126 [LMNW]
2408
2319
-
Ser
TGA
[ENA]
¡û
>W1710875433
LMOJ01000022
Betaproteobacteria
Massilia sp. Leaf139 [LMOJ]
209192
209103
-
Ser
TGA
[ENA]
¡û
>W1711046611
LROM01000062
Betaproteobacteria
Duganella phyllosphaerae [LROM]
15999
16088
+
Ser
TGA
[ENA]
¡û
>W131176169
ARJV01000021
Betaproteobacteria
Duganella zoogloeoides ATCC 25935 [ARJV]
1369
1280
-
Ser
TGA
[ENA]
¡û
>C181163929
CP028324
Betaproteobacteria
Pseudoduganella armeniaca ZMN-3 [CP028324]
2468182
2468271
+
Ser
TGA
-
¡û
>C181187774
CP030092
Betaproteobacteria
Massilia sp. YMA4 [CP030092]
2642635
2642546
-
Ser
TGA
-
¡û
>C191150827
CP036401
Betaproteobacteria
Pseudoduganella albidiflava DSM 17472 [CP036401]
4807405
4807316
-
Ser
TGA
-
¡û
>C191157317
CP038026
Betaproteobacteria
Pseudoduganella plicata DSM 17505 [CP038026]
5549064
5549153
+
Ser
TGA
-
¡û
>C191173985
CP040017
Betaproteobacteria
Pseudoduganella umbonata DSMZ 26121 [CP040017]
6934878
6934967
+
Ser
TGA
-
¡û
>W141739274
JNNN01000079
Betaproteobacteria
Massilia sp. LC238 [JNNN]
62357
62268
-
Ser
TGA
[ENA]
¡û
>W141811314
JPXI01000034
Betaproteobacteria
Massilia sp. BSC265 consociata [JPXI]
21280
21369
+
Ser
TGA
[ENA]
¡û
>W1810068760
PDZP01000019
Betaproteobacteria
Janthinobacterium sp. BJB412 [PDZP]
111310
111399
+
Ser
TGA
[ENA]
¡û
>W1810486605
QAXZ01000005
Betaproteobacteria
Massilia sp. GV045 [QAXZ]
156897
156986
+
Ser
TGA
[ENA]
¡û
>W1810487106
QAYI01000003
Betaproteobacteria
Massilia sp. GV016 [QAYI]
497448
497359
-
Ser
TGA
[ENA]
¡û
>W1810672514
QJTL01000009
Betaproteobacteria
Duganella sp. GV083 [QJTL]
17906
17817
-
Ser
TGA
[ENA]
¡û
>W1810672593
QJTN01000003
Betaproteobacteria
Massilia sp. GV024 [QJTN]
497448
497359
-
Ser
TGA
[ENA]
¡û
>W1810677222
QKMN01000009
Betaproteobacteria
Duganella sp. GV053 [QKMN]
17906
17817
-
Ser
TGA
[ENA]
¡û
>W1810693458
QLLJ01000009
Betaproteobacteria
Duganella sp. GV066 [QLLJ]
17906
17817
-
Ser
TGA
[ENA]
¡û
>W1810694420
QLLZ01000009
Betaproteobacteria
Duganella sp. GV039 [QLLZ]
17906
17817
-
Ser
TGA
[ENA]
¡û
>W1810788021
QREC01000009
Betaproteobacteria
Duganella sp. GV023 [QREC]
17906
17817
-
Ser
TGA
[ENA]
¡û
>W1810885115
QUNB01000009
Betaproteobacteria
Duganella sp. GV032 [QUNB]
17906
17817
-
Ser
TGA
[ENA]
¡û
>W1810885235
QUND01000009
Betaproteobacteria
Duganella sp. GV046 [QUND]
17906
17817
-
Ser
TGA
[ENA]
¡û
>W1810885869
QUNP01000009
Betaproteobacteria
Duganella sp. GV038 [QUNP]
17906
17817
-
Ser
TGA
[ENA]
¡û
>W1810886124
QUNU01000010
Betaproteobacteria
Duganella sp. GV067 [QUNU]
17906
17817
-
Ser
TGA
[ENA]
¡û
>SRA1015689
SRR023846.158871
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
147
58
-
Ser
TGA
[SRA]
>SRA1016108
SRR023846.350915
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
147
58
-
Ser
TGA
[SRA]
>C151092642
CP012201
Betaproteobacteria
Massilia sp. NR 4-1 [CP012201]
2659428
2659339
-
Ser
TGA
-
¡û
>C151100181
HG322949
Betaproteobacteria
Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628 [HG322949]
4092313
4092224
-
Ser
TGA
[Ensembl]
¡û
>W1610070504
BCTH01000095
Betaproteobacteria
Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628 [BCTH]
38693
38604
-
Ser
TGA
[ENA]
¡û
>W1610722889
LMCY01000043
Betaproteobacteria
Massilia sp. Root335 [LMCY]
239608
239697
+
Ser
TGA
[ENA]
¡û
>W1610723409
LMDJ01000012
Betaproteobacteria
Massilia sp. Root351 [LMDJ]
526810
526721
-
Ser
TGA
[ENA]
¡û
>W1610734120
LMLM01000004
Betaproteobacteria
Duganella sp. Leaf61 [LMLM]
64515
64604
+
Ser
TGA
[ENA]
¡û
>W1610737121
LMNW01000031
Betaproteobacteria
Duganella sp. Leaf126 [LMNW]
2408
2319
-
Ser
TGA
[ENA]
¡û
>W1610737779
LMOJ01000022
Betaproteobacteria
Massilia sp. Leaf139 [LMOJ]
209192
209103
-
Ser
TGA
[ENA]
¡û
>W1710067877
BCTH01000095
Betaproteobacteria
Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628 [BCTH]
38693
38604
-
Ser
TGA
[ENA]
¡û
>W1710515885
FNCD01000013
Betaproteobacteria
Duganella sp. OV458 [FNCD]
31244
31155
-
Ser
TGA
[ENA]
¡û
>W1710519323
FNEQ01000013
Betaproteobacteria
Duganella sp. OV510 [FNEQ]
130613
130702
+
Ser
TGA
[ENA]
¡û
>W1710547619
FODC01000010
Betaproteobacteria
Duganella sp. CF517 [FODC]
9967
9878
-
Ser
TGA
[ENA]
¡û
>W1710568806
FOTW01000013
Betaproteobacteria
Rugamonas rubra [FOTW]
47107
47196
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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