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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.25578 (33 seq.)
>W1710871768
LMLM01000002
Betaproteobacteria
Duganella sp. Leaf61 [LMLM]
182295
182206
-
Ser
CGA
[ENA]
¡û
>W1710871769
LMLM01000002
Betaproteobacteria
Duganella sp. Leaf61 [LMLM]
182060
181971
-
Ser
CGA
[ENA]
¡û
>W1710874732
LMNW01000003
Betaproteobacteria
Duganella sp. Leaf126 [LMNW]
100594
100683
+
Ser
CGA
[ENA]
¡û
>W1710874733
LMNW01000003
Betaproteobacteria
Duganella sp. Leaf126 [LMNW]
100694
100783
+
Ser
CGA
[ENA]
¡û
>W1710874734
LMNW01000003
Betaproteobacteria
Duganella sp. Leaf126 [LMNW]
100926
101015
+
Ser
CGA
[ENA]
¡û
>W1710874735
LMNW01000003
Betaproteobacteria
Duganella sp. Leaf126 [LMNW]
101025
101114
+
Ser
CGA
[ENA]
¡û
>W1711046640
LROM01000147
Betaproteobacteria
Duganella phyllosphaerae [LROM]
26586
26675
+
Ser
CGA
[ENA]
¡û
>W1711046641
LROM01000147
Betaproteobacteria
Duganella phyllosphaerae [LROM]
26832
26921
+
Ser
CGA
[ENA]
¡û
>W131176174
ARJV01000023
Betaproteobacteria
Duganella zoogloeoides ATCC 25935 [ARJV]
135351
135440
+
Ser
CGA
[ENA]
¡û
>WENV180018504
FSZM01000125
[FSZM] metagenome; soil
16555
16644
+
Ser
CGA
[ENA]
¢þ
>WENV180035781
FTLB01008061
[FTLB] metagenome; soil
89204
89115
-
Ser
CGA
[ENA]
¢þ
>C181163930
CP028324
Betaproteobacteria
Pseudoduganella armeniaca ZMN-3 [CP028324]
2611224
2611313
+
Ser
CGA
-
¡û
>C181163931
CP028324
Betaproteobacteria
Pseudoduganella armeniaca ZMN-3 [CP028324]
2617398
2617487
+
Ser
CGA
-
¡û
>C181187775
CP030092
Betaproteobacteria
Massilia sp. YMA4 [CP030092]
2502606
2502517
-
Ser
CGA
-
¡û
>C181187776
CP030092
Betaproteobacteria
Massilia sp. YMA4 [CP030092]
2498900
2498811
-
Ser
CGA
-
¡û
>C191150828
CP036401
Betaproteobacteria
Pseudoduganella albidiflava DSM 17472 [CP036401]
4574120
4574031
-
Ser
CGA
-
¡û
>C191150829
CP036401
Betaproteobacteria
Pseudoduganella albidiflava DSM 17472 [CP036401]
4570097
4570008
-
Ser
CGA
-
¡û
>C191157318
CP038026
Betaproteobacteria
Pseudoduganella plicata DSM 17505 [CP038026]
5711473
5711562
+
Ser
CGA
-
¡û
>C191157319
CP038026
Betaproteobacteria
Pseudoduganella plicata DSM 17505 [CP038026]
5712076
5712165
+
Ser
CGA
-
¡û
>C191173986
CP040017
Betaproteobacteria
Pseudoduganella umbonata DSMZ 26121 [CP040017]
7158251
7158340
+
Ser
CGA
-
¡û
>C191173987
CP040017
Betaproteobacteria
Pseudoduganella umbonata DSMZ 26121 [CP040017]
7158961
7159050
+
Ser
CGA
-
¡û
>W1610093101
CYSS01000001
Betaproteobacteria
Janthinobacterium sp. CG23_2 [CYSS]
1438017
1437928
-
Ser
CGA
[ENA]
¡û
>W1610734114
LMLM01000002
Betaproteobacteria
Duganella sp. Leaf61 [LMLM]
182295
182206
-
Ser
CGA
[ENA]
¡û
>W1610734115
LMLM01000002
Betaproteobacteria
Duganella sp. Leaf61 [LMLM]
182060
181971
-
Ser
CGA
[ENA]
¡û
>W1610737078
LMNW01000003
Betaproteobacteria
Duganella sp. Leaf126 [LMNW]
100594
100683
+
Ser
CGA
[ENA]
¡û
>W1610737079
LMNW01000003
Betaproteobacteria
Duganella sp. Leaf126 [LMNW]
100694
100783
+
Ser
CGA
[ENA]
¡û
>W1610737080
LMNW01000003
Betaproteobacteria
Duganella sp. Leaf126 [LMNW]
100926
101015
+
Ser
CGA
[ENA]
¡û
>W1610737081
LMNW01000003
Betaproteobacteria
Duganella sp. Leaf126 [LMNW]
101025
101114
+
Ser
CGA
[ENA]
¡û
>W1710096309
CYSS01000001
Betaproteobacteria
Janthinobacterium sp. CG23_2 [CYSS]
1438017
1437928
-
Ser
CGA
[ENA]
¡û
>W1710578393
FPBO01000010
Betaproteobacteria
Pseudoduganella namucuonensis [FPBO]
177712
177801
+
Ser
CGA
[ENA]
¡û
>W1710578394
FPBO01000010
Betaproteobacteria
Pseudoduganella namucuonensis [FPBO]
177832
177921
+
Ser
CGA
[ENA]
¡û
>W1710593018
FRCX01000007
Betaproteobacteria
Duganella sacchari [FRCX]
216615
216704
+
Ser
CGA
[ENA]
¡û
>W1710593019
FRCX01000007
Betaproteobacteria
Duganella sacchari [FRCX]
216736
216825
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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