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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.255822 (56 seq.)
>W1710859409
LMCC01000019
Alphaproteobacteria
Pseudovibrio sp. Ad13 [LMCC]
195491
195416
-
Thr
CGT
[ENA]
¡û
>W1710859466
LMCD01000044
Alphaproteobacteria
Pseudovibrio sp. Ad14 [LMCD]
272532
272457
-
Thr
CGT
[ENA]
¡û
>W1710859530
LMCE01000157
Alphaproteobacteria
Pseudovibrio sp. Ad26 [LMCE]
178194
178119
-
Thr
CGT
[ENA]
¡û
>W1710859592
LMCF01000223
Alphaproteobacteria
Pseudovibrio sp. Ad37 [LMCF]
143747
143672
-
Thr
CGT
[ENA]
¡û
>W1710859653
LMCG01000083
Alphaproteobacteria
Pseudovibrio sp. Ad46 [LMCG]
61361
61286
-
Thr
CGT
[ENA]
¡û
>W1710859671
LMCH01000014
Alphaproteobacteria
Pseudovibrio sp. Ad5 [LMCH]
47911
47836
-
Thr
CGT
[ENA]
¡û
>W1710859732
LMCI01000018
Alphaproteobacteria
Pseudovibrio sp. W64 [LMCI]
407695
407620
-
Thr
CGT
[ENA]
¡û
>W1710859820
LMCJ01000060
Alphaproteobacteria
Pseudovibrio sp. W74 [LMCJ]
7264
7339
+
Thr
CGT
[ENA]
¡û
>W1710859858
LMCK01000090
Alphaproteobacteria
Pseudovibrio sp. WM33 [LMCK]
266242
266317
+
Thr
CGT
[ENA]
¡û
>WENV180357686
OBNN01066663
[OBNN] marine metagenome; Coastal water
355
280
-
Thr
CGT
[ENA]
¢þ
>W141151454
AXBB01000002
Alphaproteobacteria
Phaeobacter inhibens DSM 16374 [AXBB]
110488
110413
-
Thr
CGT
[ENA]
¡û
>W141152921
AXCE01000004
Alphaproteobacteria
Labrenzia sp. C1B70 [AXCE]
635699
635774
+
Thr
CGT
[ENA]
¡û
>W141200785
AYYG01000067
Alphaproteobacteria
Labrenzia sp. DG1229 [AYYG]
3735
3660
-
Thr
CGT
[ENA]
¡û
>WENV170014550
AYRH01005545
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
267
342
+
Thr
CGT
[ENA]
¢þ
>WENV170634475
FYBJ01001430
[FYBJ] marine metagenome; marine
30651
30576
-
Thr
CGT
[ENA]
¢þ
>WENV170962230
MRWF01009747
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
158
83
-
Thr
CGT
[ENA]
¢þ
>WENV170964789
MRWG01043943
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
185
260
+
Thr
CGT
[ENA]
¢þ
>WENV170964846
MRWG01057732
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
51
126
+
Thr
CGT
[ENA]
¢þ
>C181009285
CP010689
Alphaproteobacteria
Phaeobacter piscinae P42 [CP010689]
3515811
3515886
+
Thr
CGT
-
¡û
>C181009742
CP010749
Alphaproteobacteria
Phaeobacter inhibens P70 [CP010749]
3654555
3654630
+
Thr
CGT
-
¡û
>C181009857
CP010767
Alphaproteobacteria
Phaeobacter piscinae P13 [CP010767]
3512704
3512779
+
Thr
CGT
-
¡û
>C181048989
CP021040
Alphaproteobacteria
Phaeobacter gallaeciensis P129 [CP021040]
3610045
3610120
+
Thr
CGT
-
¡û
>W1910285147
FREW01000004
Alphaproteobacteria
Labrenzia sp. Alg231-36 [FREW]
298530
298455
-
Thr
CGT
[ENA]
¡û
>W1910285195
FREX01000005
Alphaproteobacteria
Pseudovibrio sp. Alg231-02 [FREX]
289903
289828
-
Thr
CGT
[ENA]
¡û
>W1911532386
OGUZ01000004
Alphaproteobacteria
Labrenzia sp. EL143 [OGUZ]
66410
66335
-
Thr
CGT
[ENA]
¡û
>W1911538958
OMPG01000017
Alphaproteobacteria
Pseudovibrio ascidiaceicola AU243 [OMPG]
280597
280522
-
Thr
CGT
[ENA]
¡û
>W1810324340
PUDR01000008
Alphaproteobacteria
Pannonibacter carbonis Q4.6 [PUDR]
148491
148566
+
Thr
CGT
[ENA]
¡û
>W1511002458
JGVS01000003
Alphaproteobacteria
Thalassobacter stenotrophicus 1CONIMAR09 [JGVS]
256698
256773
+
Thr
CGT
[ENA]
¡û
>W1511008128
JHAK01000003
Alphaproteobacteria
Thalassobacter sp. 16PALIMAR09 [JHAK]
342874
342799
-
Thr
CGT
[ENA]
¡û
>W1511325006
JQFU01000001
Alphaproteobacteria
Rhodovulum sp. NI22 [JQFU]
255466
255541
+
Thr
CGT
[ENA]
¡û
>C121003846
CP002976
Alphaproteobacteria
Phaeobacter inhibens DSM 17395 [CP002976]
3724592
3724667
+
Thr
CGT
-
¡û
>C161029351
CP010869
Alphaproteobacteria
Actibacterium sp. EMB200-NS6 [CP010869]
105
30
-
Thr
CGT
[Ensembl]
¡û
>W1610042595
BAXV01000016
Alphaproteobacteria
Pseudovibrio sp. JCM 19062 [BAXV]
8717
8792
+
Thr
CGT
[ENA]
¡û
>W1610092014
CXST01000003
Alphaproteobacteria
Roseibium aggregatum aggregata [CXST]
98662
98587
-
Thr
CGT
[ENA]
¡û
>W1610092110
CXTY01000039
Alphaproteobacteria
Roseibium album alba [CXTY]
90724
90649
-
Thr
CGT
[ENA]
¡û
>W1610092116
CXWA01000002
Alphaproteobacteria
Roseibium album alba [CXWA]
88341
88266
-
Thr
CGT
[ENA]
¡û
>W1610092254
CXWE01000003
Alphaproteobacteria
Roseibium album alba [CXWE]
88341
88266
-
Thr
CGT
[ENA]
¡û
>W1610585584
LCWX01000079
Alphaproteobacteria
Pseudovibrio sp. POLY-S9 [LCWX]
125261
125186
-
Thr
CGT
[ENA]
¡û
>W1610721755
LMCC01000019
Alphaproteobacteria
Pseudovibrio sp. Ad13 [LMCC]
195491
195416
-
Thr
CGT
[ENA]
¡û
>W1610721812
LMCD01000044
Alphaproteobacteria
Pseudovibrio sp. Ad14 [LMCD]
272532
272457
-
Thr
CGT
[ENA]
¡û
>W1610721876
LMCE01000157
Alphaproteobacteria
Pseudovibrio sp. Ad26 [LMCE]
178194
178119
-
Thr
CGT
[ENA]
¡û
>W1610721938
LMCF01000223
Alphaproteobacteria
Pseudovibrio sp. Ad37 [LMCF]
143747
143672
-
Thr
CGT
[ENA]
¡û
>W1610721999
LMCG01000083
Alphaproteobacteria
Pseudovibrio sp. Ad46 [LMCG]
61361
61286
-
Thr
CGT
[ENA]
¡û
>W1610722017
LMCH01000014
Alphaproteobacteria
Pseudovibrio sp. Ad5 [LMCH]
47911
47836
-
Thr
CGT
[ENA]
¡û
>W1610722078
LMCI01000018
Alphaproteobacteria
Pseudovibrio sp. W64 [LMCI]
407695
407620
-
Thr
CGT
[ENA]
¡û
>W1610722166
LMCJ01000060
Alphaproteobacteria
Pseudovibrio sp. W74 [LMCJ]
7264
7339
+
Thr
CGT
[ENA]
¡û
>W1610722204
LMCK01000090
Alphaproteobacteria
Pseudovibrio sp. WM33 [LMCK]
266242
266317
+
Thr
CGT
[ENA]
¡û
>W1710039689
BAXV01000016
Alphaproteobacteria
Pseudovibrio sp. JCM 19062 [BAXV]
8717
8792
+
Thr
CGT
[ENA]
¡û
>W1710095371
CXST01000003
Alphaproteobacteria
Roseibium aggregatum aggregata [CXST]
98662
98587
-
Thr
CGT
[ENA]
¡û
>W1710095467
CXTY01000039
Alphaproteobacteria
Roseibium album alba [CXTY]
90724
90649
-
Thr
CGT
[ENA]
¡û
>W1710095473
CXWA01000002
Alphaproteobacteria
Roseibium album alba [CXWA]
88341
88266
-
Thr
CGT
[ENA]
¡û
>W1710095611
CXWE01000003
Alphaproteobacteria
Roseibium album alba [CXWE]
88341
88266
-
Thr
CGT
[ENA]
¡û
>W1710527520
FNLB01000006
Alphaproteobacteria
Pseudovibrio sp. Tun.PSC04-5.I4 Tun.PHSC04-5.I4 [FNLB]
3476681
3476756
+
Thr
CGT
[ENA]
¡û
>W1710550709
FOFM01000007
Alphaproteobacteria
Pseudovibrio axinellae [FOFM]
231026
230951
-
Thr
CGT
[ENA]
¡û
>W1710567023
FOSK01000006
Alphaproteobacteria
Pseudovibrio ascidiaceicola [FOSK]
78586
78661
+
Thr
CGT
[ENA]
¡û
>W1710704775
LCWX01000079
Alphaproteobacteria
Pseudovibrio sp. POLY-S9 [LCWX]
125261
125186
-
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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