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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.255841 (52 seq.)
>W1710857007
LLZU01000004
Actinomycetota
Wenjunlia vitaminophila vitaminophilus [LLZU]
28908
28833
-
Trp
CCA
[ENA]
¡û
>W1710866812
LMHU01000001
Actinomycetota
Terrabacter sp. Root181 [LMHU]
1206306
1206379
+
Trp
CCA
[ENA]
¡û
>W1710881153
LMSW01000011
Actinomycetota
Terrabacter sp. Soil810 [LMSW]
290616
290689
+
Trp
CCA
[ENA]
¡û
>W1710881191
LMSX01000001
Actinomycetota
Terrabacter sp. Soil811 [LMSX]
691983
691910
-
Trp
CCA
[ENA]
¡û
>W1710996461
LQBL01000011
Actinomycetota
Serinicoccus chungangensis [LQBL]
171342
171415
+
Trp
CCA
[ENA]
¡û
>W1711312298
MAST01000011
Actinomycetota
Humibacillus sp. DSM 29435 [MAST]
74450
74377
-
Trp
CCA
[ENA]
¡û
>W1711491933
MKJZ01000006
Actinomycetota
Serinicoccus sp. CUA-874 [MKJZ]
15757
15830
+
Trp
CCA
[ENA]
¡û
>W1711492220
MKKF01000013
Actinomycetota
Serinicoccus sp. CNJ-927 [MKKF]
5120
5193
+
Trp
CCA
[ENA]
¡û
>W1711511144
MLCF01000004
Actinomycetota
Mangrovactinospora gilvigrisea gilvigriseus [MLCF]
10466
10541
+
Trp
CCA
[ENA]
¡û
>W1711627040
MPLE01000004
Actinomycetota
Streptomyces viridifaciens [MPLE]
4204782
4204855
+
Trp
CCA
[ENA]
¡û
>C171034667
CP014989
Actinomycetota
Serinicoccus hydrothermalis JLT9 [CP014989]
3150747
3150820
+
Trp
CCA
-
¡û
>C171109498
CP020567
Actinomycetota
Kitasatospora aureofaciens DM-1 [CP020567]
3221391
3221464
+
Trp
CCA
-
¡û
>W131217168
ATWM01000006
Actinomycetota
Serinicoccus marinus DSM 15273 [ATWM]
182479
182552
+
Trp
CCA
[ENA]
¡û
>WENV180284013
OBID01010754
[OBID] metagenome; sludge
1546
1619
+
Trp
CCA
[ENA]
¢þ
>WENV180311522
OBJT01353692
[OBJT] soil metagenome; soil
148
221
+
Trp
CCA
[ENA]
¢þ
>W141142498
AWQS01000169
Actinomycetota
Intrasporangium chromatireducens Q5-1 [AWQS]
2617
2690
+
Trp
CCA
[ENA]
¡û
>W141143053
AWSA01000005
Actinomycetota
Intrasporangium oryzae NRRL B-24470 [AWSA]
8472
8545
+
Trp
CCA
[ENA]
¡û
>WENV183704298
PDWI01000138
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1431
1358
-
Trp
CCA
[ENA]
¢þ
>WENV183749698
PPFU01200734
[PPFU] hypolithon metagenome; Antarctic Hypolithon
2334
2407
+
Trp
CCA
[ENA]
¢þ
>WENV170973944
MTKY01051968
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
584
511
-
Trp
CCA
[ENA]
¢þ
>WENV170977876
MTKZ01034267
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
10804
10731
-
Trp
CCA
[ENA]
¢þ
>WENV170979841
MTKZ01110547
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
829
902
+
Trp
CCA
[ENA]
¢þ
>C181197168
CP031229
Actinomycetota
Ornithinimicrobium avium AMA3305 [CP031229]
3648493
3648566
+
Trp
CCA
-
¡û
>C181198643
CP031264
Actinomycetota
Peterkaempfera bronchialis DSM 106435 [CP031264]
2764583
2764510
-
Trp
CCA
-
¡û
>C191158389
CP038213
Actinomycetota
Ornithinimicrobium flavum CPCC 203535 [CP038213]
2833561
2833488
-
Trp
CCA
-
¡û
>C191183683
CP040887
Actinomycetota
Serinicoccus chungangensis CCUG 59777 [CP040887]
2499344
2499271
-
Trp
CCA
-
¡û
>W141564800
JIBA01000015
Actinomycetota
Intrasporangiaceae bacterium URHB0013 [JIBA]
225925
225852
-
Trp
CCA
[ENA]
¡û
>W141755550
JNWQ01000035
Actinomycetota
Streptomyces novaecaesareae [JNWQ]
16764
16691
-
Trp
CCA
[ENA]
¡û
>W141755664
JNWR01000071
Actinomycetota
Kitasatospora aureofaciens [JNWR]
10302
10375
+
Trp
CCA
[ENA]
¡û
>W141759674
JNZN01000140
Actinomycetota
Streptomyces pyridomyceticus [JNZN]
4332
4405
+
Trp
CCA
[ENA]
¡û
>W141761788
JOAY01000039
Actinomycetota
Streptomyces pyridomyceticus [JOAY]
49076
49149
+
Trp
CCA
[ENA]
¡û
>W141763676
JOCF01000001
Actinomycetota
Streptomyces sp. NRRL WC-3742 [JOCF]
137055
136982
-
Trp
CCA
[ENA]
¡û
>W141768784
JOFK01000063
Actinomycetota
Kitasatospora aureofaciens avellaneus [JOFK]
17735
17662
-
Trp
CCA
[ENA]
¡û
>W141770128
JOGG01000068
Actinomycetota
Streptomyces sp. NRRL B-5680 [JOGG]
17749
17676
-
Trp
CCA
[ENA]
¡û
>W141771626
JOHH01000013
Actinomycetota
Streptomyces sp. NRRL B-2030 [JOHH]
505
578
+
Trp
CCA
[ENA]
¡û
>W141771999
JOHO01000003
Actinomycetota
Streptomyces sp. NRRL S-350 [JOHO]
197482
197555
+
Trp
CCA
[ENA]
¡û
>W1911494810
OBMJ01000001
Actinomycetota
Streptomyces sp. 1331.2 [OBMJ]
4368673
4368746
+
Trp
CCA
[ENA]
¡û
>W1810907986
QVIG01000001
Actinomycetota
Kitasatospora xanthocidica MMS17-GH009 [QVIG]
5087826
5087753
-
Trp
CCA
[ENA]
¡û
>C11111432
CP002343
Actinomycetota
Intrasporangium calvum DSM 43043 [CP002343]
3107558
3107485
-
Trp
CCA
[Ensembl]
¡û
>W1511311677
JPRF01000448
Actinomycetota
Kitasatospora aureofaciens ATCC 10762 [JPRF]
11728
11801
+
Trp
CCA
[ENA]
¡û
>W1511545174
JZKG01000026
Actinomycetota
Streptomyces rubellomurinus subsp. indigoferus ATCC 31304 [JZKG]
51211
51138
-
Trp
CCA
[ENA]
¡û
>W1511545233
JZKH01000008
Actinomycetota
Streptomyces rubellomurinus ATCC 31215 [JZKH]
116112
116039
-
Trp
CCA
[ENA]
¡û
>W1511590456
LBHA01000226
Actinomycetota
Kitasatospora aureofaciens NRRL 2209 [LBHA]
8322
8395
+
Trp
CCA
[ENA]
¡û
>W11177030
AFYF01000076
Actinomycetota
Serinicoccus profundi MCCC 1A05965 [AFYF]
38720
38647
-
Trp
CCA
[ENA]
¡û
>W1610633398
LIQR01000297
Actinomycetota
Peterkaempfera griseoplana griseoplanus [LIQR]
1197
1270
+
Trp
CCA
[ENA]
¡û
>W1610719388
LLZU01000004
Actinomycetota
Wenjunlia vitaminophila vitaminophilus [LLZU]
28908
28833
-
Trp
CCA
[ENA]
¡û
>W1610729158
LMHU01000001
Actinomycetota
Terrabacter sp. Root181 [LMHU]
1206306
1206379
+
Trp
CCA
[ENA]
¡û
>W1610743499
LMSW01000011
Actinomycetota
Terrabacter sp. Soil810 [LMSW]
290616
290689
+
Trp
CCA
[ENA]
¡û
>W1610743537
LMSX01000001
Actinomycetota
Terrabacter sp. Soil811 [LMSX]
691983
691910
-
Trp
CCA
[ENA]
¡û
>W1610851118
LQBL01000011
Actinomycetota
Serinicoccus chungangensis [LQBL]
171342
171415
+
Trp
CCA
[ENA]
¡û
>W1710765849
LIPD01000008
Actinomycetota
Streptomyces sp. CB02056 [LIPD]
283781
283708
-
Trp
CCA
[ENA]
¡û
>W1710767830
LIQR01000297
Actinomycetota
Peterkaempfera griseoplana griseoplanus [LIQR]
1197
1270
+
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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