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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.25586 (39 seq.)
>W1710864226
LMFS01000001
Alphaproteobacteria
Pseudolabrys sp. Root1462 [LMFS]
1922714
1922803
+
Ser
TGA
[ENA]
¡û
>W1710926957
LOEV01000072
Alphaproteobacteria
Alphaproteobacteria bacterium BRH_c36 [LOEV]
18408
18497
+
Ser
TGA
[ENA]
¡û
>W1711505820
MKVW01000003
Alphaproteobacteria
Rhizobiales bacterium 62-17 [MKVW]
653685
653774
+
Ser
TGA
[ENA]
¡û
>W1711795365
MWPQ01000031
Alphaproteobacteria
Nitrobacter vulgaris [MWPQ]
98576
98665
+
Ser
TGA
[ENA]
¡û
>W1711795366
MWPQ01000036
Alphaproteobacteria
Nitrobacter vulgaris [MWPQ]
10
99
+
Ser
TGA
[ENA]
¡û
>C014926
CP000319
Alphaproteobacteria
Nitrobacter hamburgensis X14 [CP000319]
2240909
2240998
+
Ser
TGA
[Ensembl]
¡û
>C018871
CP000463
Alphaproteobacteria
Rhodopseudomonas palustris [CP000463]
3000019
2999930
-
Ser
TGA
[Ensembl]
¡û
>C018964
CP000283
Alphaproteobacteria
Rhodopseudomonas palustris BisB5 [CP000283]
2681606
2681517
-
Ser
TGA
[Ensembl]
¡û
>w012993
AAMY01000010
Alphaproteobacteria
Nitrobacter sp. Nb-311A [AAMY]
113993
114084
+
Ser
TGA
[ENA]
¡û
>WENV181162499
OEIO01000050
[OEIO] marine metagenome; sea ice
6385
6474
+
Ser
TGA
[ENA]
¢þ
>WENV181307932
OFIS01000041
[OFIS] sludge metagenome; sludge
6858
6769
-
Ser
TGA
[ENA]
¢þ
>WENV181321536
OFKM01008997
[OFKM] marine metagenome; sea ice
625
714
+
Ser
TGA
[ENA]
¢þ
>WENV181322067
OFKP01003012
[OFKP] marine metagenome; sea ice
184
273
+
Ser
TGA
[ENA]
¢þ
>WENV181322612
OFKT01005209
[OFKT] marine metagenome; sea ice
93
4
-
Ser
TGA
[ENA]
¢þ
>WENV181401858
OFTX01011423
[OFTX] sludge metagenome; sludge
26
115
+
Ser
TGA
[ENA]
¢þ
>WENV181402589
OFTY01006232
[OFTY] sludge metagenome; sludge
1815
1904
+
Ser
TGA
[ENA]
¢þ
>W08007842
ABKN01000001
Alphaproteobacteria
Afipia carboxidovorans OM5 [ABKN]
2078900
2078989
+
Ser
TGA
[ENA]
¡û
>WENV183614815
OOEA01001876
[OOEA] marine metagenome; sea ice
1275
1186
-
Ser
TGA
[ENA]
¢þ
>WENV183615367
OOEB01008310
[OOEB] marine metagenome; sea ice
276
365
+
Ser
TGA
[ENA]
¢þ
>WENV183623563
OOGA01010500
[OOGA] marine metagenome; sea ice
383
294
-
Ser
TGA
[ENA]
¢þ
>WENV183630622
OOGU01000015
[OOGU] marine metagenome; sea ice
51974
52063
+
Ser
TGA
[ENA]
¢þ
>WENV170003974
AGTN01519743
[AGTN] bioreactor metagenome; poplar biomass
129
218
+
Ser
TGA
[ENA]
¢þ
>WENV170962233
MRWF01009891
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
26158
26069
-
Ser
TGA
[ENA]
¢þ
>WENV170963065
MRWG01000007
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
234036
234125
+
Ser
TGA
[ENA]
¢þ
>W09103003
AAIS01000002
Alphaproteobacteria
Nitrobacter hamburgensis X14 [AAIS]
600017
599928
-
Ser
TGA
[ENA]
¡û
>W09103848
AAKZ01000018
Alphaproteobacteria
Rhodopseudomonas palustris BisB5 [AAKZ]
13624
13535
-
Ser
TGA
[ENA]
¡û
>W09103883
AALA01000016
Alphaproteobacteria
Rhodopseudomonas palustris BisA53 [AALA]
16354
16443
+
Ser
TGA
[ENA]
¡û
>C191171950
CP039740
Alphaproteobacteria
Pseudolabrys sp. FHR47 [CP039740]
2456418
2456507
+
Ser
TGA
-
¡û
>W141564380
JIAS01000011
Alphaproteobacteria
Dongia sp. URHE0060 [JIAS]
507473
507384
-
Ser
TGA
[ENA]
¡û
>W1910182860
BJNF01000073
Alphaproteobacteria
Nitrobacter winogradskyi NBRC 14297 [BJNF]
65591
65680
+
Ser
TGA
[ENA]
¡û
>C09108141
CP001196
Alphaproteobacteria
Afipia carboxidovorans OM5 OM5; ATCC 49405 [CP001196]
2078586
2078675
+
Ser
TGA
-
¡û
>W1911148508
NPEX01000088
Alphaproteobacteria
Rhodoplanes roseus DSM 5909 [NPEX]
13471
13560
+
Ser
TGA
[ENA]
¡û
>W1911760552
QWVU01000007
Alphaproteobacteria
Rhodopseudomonas palustris R1 [QWVU]
7536
7625
+
Ser
TGA
[ENA]
¡û
>W1810789379
QRGO01000003
Alphaproteobacteria
Undibacter mobilis GY_H [QRGO]
165019
164930
-
Ser
TGA
[ENA]
¡û
>C11116291
CP002821
Alphaproteobacteria
Afipia carboxidovorans OM4 [CP002821]
2047059
2046970
-
Ser
TGA
[Ensembl]
¡û
>C121003011
CP002826
Alphaproteobacteria
Afipia carboxidovorans OM5 [CP002826]
2045933
2045844
-
Ser
TGA
-
¡û
>W1610726572
LMFS01000001
Alphaproteobacteria
Pseudolabrys sp. Root1462 [LMFS]
1922714
1922803
+
Ser
TGA
[ENA]
¡û
>W1610784499
LOEV01000072
Alphaproteobacteria
Alphaproteobacteria bacterium BRH_c36 [LOEV]
18408
18497
+
Ser
TGA
[ENA]
¡û
>W1710548428
FODT01000010
Alphaproteobacteria
Rhodopseudomonas pseudopalustris [FODT]
8985
8896
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK