This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.255887 (24 seq.)
>A171002742
CP003083
Euryarchaeota
Methanolobus psychrophilus R15 [CP003083]
1780288
1780361
+
Ala
TGC
-
¡û
>A171002750
CP003083
Euryarchaeota
Methanolobus psychrophilus R15 [CP003083]
2441123
2441196
+
Ala
TGC
-
¡û
>A171002766
CP003083
Euryarchaeota
Methanolobus psychrophilus R15 [CP003083]
1452892
1452819
-
Ala
TGC
-
¡û
>A171005347
CP009518
Euryarchaeota
Methanococcoides methylutens MM1 [CP009518]
43403
43475
+
Ala
TGC
-
¡û
>A171005357
CP009518
Euryarchaeota
Methanococcoides methylutens MM1 [CP009518]
542614
542686
+
Ala
TGC
-
¡û
>A171005384
CP009518
Euryarchaeota
Methanococcoides methylutens MM1 [CP009518]
1580919
1580847
-
Ala
TGC
-
¡û
>WENV180298401
OBJA01319206
[OBJA] soil metagenome; sediment, water from around vicinity
151
223
+
Ala
TGC
[ENA]
¢þ
>WENV180345371
OBLN01000001
[OBLN] sediment metagenome; sediment
153
225
+
Ala
TGC
[ENA]
¢þ
>WENV183516634
OMKS01221154
[OMKS] sediment metagenome; hot spring sediment
365
437
+
Ala
TGC
[ENA]
¢þ
>WENV170004717
AHKK01009336
[AHKK] sediment metagenome; Nyegga cold-seep field located at the mid-Norwegian margin on the northern edge of the Storegga
69
144
+
Ala
TGC
[ENA]
¢þ
>WENV170014890
AZIC01002941
[AZIC] marine sediment metagenome; sample MGS-MES from oil contaminated site at the harbour of Messina (Sicily, Italy)
1859
1931
+
Ala
TGC
[ENA]
¢þ
>WENV170015242
AZIF01000148
[AZIF] marine sediment metagenome; sample MGS-PRI from oil contaminated site at the harbour of Priolo Gargallo (Siracusa, Italy)
1911
1983
+
Ala
TGC
[ENA]
¢þ
>WENV170692803
LGOV01032217
[LGOV] marine sediment metagenome; sample #5579, elevator 3A push core 41 containing 12 cm of sediment, collected at Hydrate Ridge
228
300
+
Ala
TGC
[ENA]
¢þ
>WENV170695607
LGVE01130041
[LGVE] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
1183
1111
-
Ala
TGC
[ENA]
¢þ
>WENV170699909
LGVF01679703
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
954
882
-
Ala
TGC
[ENA]
¢þ
>W1910229876
FOHQ01000015
Euryarchaeota
Methanococcoides vulcani SLH 33 [FOHQ]
1471
1399
-
Ala
TGC
[ENA]
¡û
>W1910230597
FOUJ01000015
Euryarchaeota
Methanolobus profundi Mob M [FOUJ]
1685
1611
-
Ala
TGC
[ENA]
¡û
>W1910230598
FOUJ01000018
Euryarchaeota
Methanolobus profundi Mob M [FOUJ]
3460
3386
-
Ala
TGC
[ENA]
¡û
>W1910575257
JRHO01000009
Euryarchaeota
Methanococcoides methylutens DSM 2657 [JRHO]
1650
1722
+
Ala
TGC
[ENA]
¡û
>W1911581838
PGGK01000028
Euryarchaeota
Methanolobus halotolerans SY-01 [PGGK]
3460
3388
-
Ala
TGC
[ENA]
¡û
>W1610032590
AZAJ01000001
Euryarchaeota
Methanolobus tindarius DSM 2278 [AZAJ]
1827567
1827641
+
Ala
TGC
[ENA]
¡û
>W1610032611
AZAJ01000001
Euryarchaeota
Methanolobus tindarius DSM 2278 [AZAJ]
1430092
1430018
-
Ala
TGC
[ENA]
¡û
>W1610032618
AZAJ01000001
Euryarchaeota
Methanolobus tindarius DSM 2278 [AZAJ]
771561
771487
-
Ala
TGC
[ENA]
¡û
>W1610919915
LSRV01000064
Euryarchaeota
Methanolobus sp. T82-4 [LSRV]
3497
3425
-
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK