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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.255946 (77 seq.)
>W1710860536
LMCY01000032
Betaproteobacteria
Massilia sp. Root335 [LMCY]
7163
7238
+
Thr
TGT
[ENA]
¡û
>W1710955092
LOXQ01000029
Betaproteobacteria
Burkholderia sp. MSMB2040 [LOXQ]
6514
6439
-
Thr
TGT
[ENA]
¡û
>W1710974554
LPKI01000050
Betaproteobacteria
Burkholderia sp. MSMB617WGS [LPKI]
7077
7002
-
Thr
TGT
[ENA]
¡û
>W1711148864
LVKV01000124
Betaproteobacteria
Ralstonia solanacearum [LVKV]
53468
53393
-
Thr
TGT
[ENA]
¡û
>W1711167629
LVWN01000041
Betaproteobacteria
Cupriavidus necator [LVWN]
84658
84733
+
Thr
TGT
[ENA]
¡û
>W1711221719
LXRI01000030
Betaproteobacteria
Candidatus Glomeribacter gigasporarum [LXRI]
416
491
+
Thr
TGT
[ENA]
¡û
>W1711221762
LXRJ01000034
Betaproteobacteria
Candidatus Glomeribacter gigasporarum [LXRJ]
2594
2669
+
Thr
TGT
[ENA]
¡û
>W1711602812
MOLJ01000007
Betaproteobacteria
Ralstonia solanacearum [MOLJ]
54747
54822
+
Thr
TGT
[ENA]
¡û
>W131156206
AQPL01000083
Betaproteobacteria
Cupriavidus sp. WS [AQPL]
11031
10956
-
Thr
TGT
[ENA]
¡û
>W131158972
AQUR01000083
Betaproteobacteria
Cupriavidus neocaledonicus STM 6070 [AQUR]
85836
85911
+
Thr
TGT
[ENA]
¡û
>C171024337
CP013424
Betaproteobacteria
Burkholderia savannae MSMB852 [CP013424, CP013425]
469695
469770
+
Thr
TGT
-
¡û
>C171066951
CP017748
Betaproteobacteria
Cupriavidus sp. USMAA2-4 [CP017748, CP017749]
2901227
2901302
+
Thr
TGT
-
¡û
>C171119239
CP021448
Betaproteobacteria
Ralstonia solanacearum SEPPX05 [CP021448]
364198
364123
-
Thr
TGT
-
¡û
>WENV180030134
FTJL01204371
[FTJL] metagenome; soil
335
260
-
Thr
TGT
[ENA]
¢þ
>WENV180355474
OBNI01000033
[OBNI] sediment metagenome; sediment
29514
29589
+
Thr
TGT
[ENA]
¢þ
>WENV180355797
OBNJ01000505
[OBNJ] sediment metagenome; sediment
2214
2289
+
Thr
TGT
[ENA]
¢þ
>W141240840
CAGT01000284
Betaproteobacteria
Ralstonia solanacearum K60-1 [CAGT]
54576
54651
+
Thr
TGT
[ENA]
¡û
>W141284126
JALO01000027
Betaproteobacteria
Ralstonia solanacearum P673 [JALO]
84173
84248
+
Thr
TGT
[ENA]
¡û
>ENV08001994
ABOK01241392
mosquito metagenome; viral fraction from Mung bean nuclease digestion of DNA from mixed species mosquitoes collected in Mission Valley in San Diego, CA
4
79
+
Thr
TGT
[ENA]
¡û
>WENV170593479
FUFK010889716
[FUFK] metagenome; unknown
578
503
-
Thr
TGT
[ENA]
¢þ
>W141463975
JFJW01000148
Betaproteobacteria
Cupriavidus sp. SK-4 [JFJW]
4688
4613
-
Thr
TGT
[ENA]
¡û
>WENV170965693
MTEV01000331
[MTEV] soil metagenome; soil bioaugmentation with soil previously exposed to atrazine
1424
1349
-
Thr
TGT
[ENA]
¢þ
>W09101096
AADY01000009
Betaproteobacteria
Cupriavidus pinatubonensis JMP134 [AADY]
89172
89097
-
Thr
TGT
[ENA]
¡û
>C191019241
CP021762
Betaproteobacteria
Ralstonia pseudosolanacearum RS 476 [CP021762]
3156379
3156304
-
Thr
TGT
-
¡û
>C191021316
CP022757
Betaproteobacteria
Ralstonia solanacearum T101 [CP022757]
480631
480706
+
Thr
TGT
-
¡û
>C191022058
CP022786
Betaproteobacteria
Ralstonia solanacearum SL3300 [CP022786]
609544
609619
+
Thr
TGT
-
¡û
>C191022110
CP022788
Betaproteobacteria
Ralstonia solanacearum SL3175 [CP022788]
488588
488663
+
Thr
TGT
-
¡û
>C191022321
CP022796
Betaproteobacteria
Ralstonia solanacearum SL2312 [CP022796]
480639
480714
+
Thr
TGT
-
¡û
>C191022372
CP022798
Betaproteobacteria
Ralstonia solanacearum SL2064 [CP022798]
546125
546200
+
Thr
TGT
-
¡û
>C191023460
CP023016
Betaproteobacteria
Ralstonia solanacearum SL3022 [CP023016]
479673
479748
+
Thr
TGT
-
¡û
>W141526135
JHBO01000079
Betaproteobacteria
Ralstonia solanacearum Rs-09-161 [JHBO]
4930
4855
-
Thr
TGT
[ENA]
¡û
>W141728331
JNGD01000003
Betaproteobacteria
Ralstonia solanacearum [JNGD]
53424
53349
-
Thr
TGT
[ENA]
¡û
>W141811329
JPXI01000042
Betaproteobacteria
Massilia sp. BSC265 consociata [JPXI]
27759
27834
+
Thr
TGT
[ENA]
¡û
>C141006478
CP006667
Betaproteobacteria
Ralstonia pickettii DTP0602 [CP006667, CP006668, CP006669]
4114329
4114254
-
Thr
TGT
[Ensembl]
¡û
>W1910636899
LPWJ01000299
Betaproteobacteria
Cupriavidus sp. UYMSc13B [LPWJ]
12562
12637
+
Thr
TGT
[ENA]
¡û
>W1910870499
NCTI01000001
Betaproteobacteria
Ralstonia solanacearum UW551 [NCTI]
2898557
2898482
-
Thr
TGT
[ENA]
¡û
>W1910870536
NCTJ01000002
Betaproteobacteria
Ralstonia solanacearum UW700 [NCTJ]
33713
33638
-
Thr
TGT
[ENA]
¡û
>W1911518188
OFSO01000014
Betaproteobacteria
Cupriavidus taiwanensis [OFSO]
101286
101211
-
Thr
TGT
[ENA]
¡û
>W1911518353
OFSR01000019
Betaproteobacteria
Cupriavidus taiwanensis [OFSR]
101373
101298
-
Thr
TGT
[ENA]
¡û
>W1911518663
OFSY01000005
Betaproteobacteria
Cupriavidus taiwanensis [OFSY]
100962
100887
-
Thr
TGT
[ENA]
¡û
>W1911518800
OFTA01000009
Betaproteobacteria
Cupriavidus taiwanensis [OFTA]
122749
122674
-
Thr
TGT
[ENA]
¡û
>W1911518964
OFTD01000008
Betaproteobacteria
Cupriavidus taiwanensis [OFTD]
122756
122681
-
Thr
TGT
[ENA]
¡û
>W1911519295
OFTJ01000017
Betaproteobacteria
Cupriavidus taiwanensis [OFTJ]
101259
101184
-
Thr
TGT
[ENA]
¡û
>W1911532237
OGUS01000124
Betaproteobacteria
Cupriavidus oxalaticus [OGUS]
318745
318670
-
Thr
TGT
[ENA]
¡û
>W1911532280
OGUT01000018
Betaproteobacteria
Cupriavidus taiwanensis [OGUT]
59422
59497
+
Thr
TGT
[ENA]
¡û
>W1911532313
OGUU01000002
Betaproteobacteria
Cupriavidus taiwanensis [OGUU]
101152
101077
-
Thr
TGT
[ENA]
¡û
>W1810109678
PHHM01000013
Betaproteobacteria
Ralstonia solanacearum GEO_6 [PHHM]
53438
53363
-
Thr
TGT
[ENA]
¡û
>W1810109716
PHHN01000004
Betaproteobacteria
Ralstonia solanacearum GEO_81 [PHHN]
53394
53319
-
Thr
TGT
[ENA]
¡û
>W1810696473
QLTI01000013
Betaproteobacteria
Cupriavidus alkaliphilus MtRBr-3211 [QLTI]
103390
103465
+
Thr
TGT
[ENA]
¡û
>C151070015
CP010516
Betaproteobacteria
Cupriavidus gilardii CR3 [CP010516, CP010517]
3051261
3051186
-
Thr
TGT
-
¡û
>C151070651
CP010536
Betaproteobacteria
Cupriavidus basilensis 4G11 [CP010536, CP010537]
4078570
4078495
-
Thr
TGT
[Ensembl]
¡û
>W1510073306
CDLW01000001
Betaproteobacteria
Ralstonia solanacearum Grenada 9-1 [CDLW]
2348432
2348507
+
Thr
TGT
[ENA]
¡û
>W1510073428
CDLZ01000001
Betaproteobacteria
Ralstonia solanacearum UW179 [CDLZ]
691896
691971
+
Thr
TGT
[ENA]
¡û
>W1510079867
CDRJ01000001
Betaproteobacteria
Ralstonia solanacearum CFBP7014 [CDRJ]
3975074
3975149
+
Thr
TGT
[ENA]
¡û
>W1510081104
CDRX01000001
Betaproteobacteria
Ralstonia solanacearum RS2 [CDRX]
3810354
3810279
-
Thr
TGT
[ENA]
¡û
>W1511317159
JPWT01000131
Betaproteobacteria
Burkholderia sp. ABCPW 111 ABCPW 111 [JPWT]
6735
6810
+
Thr
TGT
[ENA]
¡û
>W1511483782
JWMA01000054
Betaproteobacteria
Cupriavidus sp. IDO [JWMA]
58255
58180
-
Thr
TGT
[ENA]
¡û
>W1511483850
JWMB01000060
Betaproteobacteria
Cupriavidus sp. SHE [JWMB]
71823
71748
-
Thr
TGT
[ENA]
¡û
>W11175694
AFWL01000261
Betaproteobacteria
Ralstonia solanacearum Y45 [AFWL]
5385
5310
-
Thr
TGT
[ENA]
¡û
>W11187558
CAFB01000034
Betaproteobacteria
Candidatus Glomeribacter gigasporarum gigasporarum BEG34 [CAFB]
69104
69179
+
Thr
TGT
[ENA]
¡û
>C121016474
FP885906
Betaproteobacteria
Ralstonia solanacearum PSI07 [FP885906]
563074
563149
+
Thr
TGT
[Ensembl]
¡û
>C161076338
CP014702
Betaproteobacteria
Ralstonia solanacearum KACC 10722 [CP014702]
538577
538652
+
Thr
TGT
[Ensembl]
¡û
>W121033606
AHJE01000051
Betaproteobacteria
Cupriavidus basilensis OR16 [AHJE]
26775
26850
+
Thr
TGT
[ENA]
¡û
>W1610077524
BCZN01000028
Betaproteobacteria
Cupriavidus necator NBRC 102504 [BCZN]
44827
44752
-
Thr
TGT
[ENA]
¡û
>W1610077586
BCZO01000011
Betaproteobacteria
Cupriavidus metallidurans NBRC 101272 [BCZO]
185191
185116
-
Thr
TGT
[ENA]
¡û
>C131011458
CP004012
Betaproteobacteria
Ralstonia pseudosolanacearum FQY_4 [CP004012]
3100498
3100423
-
Thr
TGT
[Ensembl]
¡û
>W1610521108
JIBY01000037
Betaproteobacteria
Ralstonia solanacearum [JIBY]
95679
95754
+
Thr
TGT
[ENA]
¡û
>W1610599153
LFJP01000042
Betaproteobacteria
Ralstonia pseudosolanacearum solanacearum [LFJP]
54926
54851
-
Thr
TGT
[ENA]
¡û
>W1610811254
LOXQ01000029
Betaproteobacteria
Burkholderia sp. MSMB2040 [LOXQ]
6514
6439
-
Thr
TGT
[ENA]
¡û
>W1610830768
LPKI01000050
Betaproteobacteria
Burkholderia sp. MSMB617WGS [LPKI]
7077
7002
-
Thr
TGT
[ENA]
¡û
>W1610959595
LVKV01000124
Betaproteobacteria
Ralstonia solanacearum [LVKV]
53468
53393
-
Thr
TGT
[ENA]
¡û
>W1611006188
LXRI01000030
Betaproteobacteria
Candidatus Glomeribacter gigasporarum [LXRI]
416
491
+
Thr
TGT
[ENA]
¡û
>W1611006231
LXRJ01000034
Betaproteobacteria
Candidatus Glomeribacter gigasporarum [LXRJ]
2594
2669
+
Thr
TGT
[ENA]
¡û
>W1710075162
BCZN01000028
Betaproteobacteria
Cupriavidus necator NBRC 102504 [BCZN]
44827
44752
-
Thr
TGT
[ENA]
¡û
>W1710075224
BCZO01000011
Betaproteobacteria
Cupriavidus metallidurans NBRC 101272 [BCZO]
185191
185116
-
Thr
TGT
[ENA]
¡û
>W1710619455
JIBY01000037
Betaproteobacteria
Ralstonia solanacearum [JIBY]
95679
95754
+
Thr
TGT
[ENA]
¡û
>W1710720511
LFJP01000042
Betaproteobacteria
Ralstonia pseudosolanacearum solanacearum [LFJP]
54926
54851
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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