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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.256121 (81 seq.)
>W1711170178
LWAF01000001
Thermotogota
Fervidobacterium thailandense thailandensis [LWAF]
28811
28886
+
Ala
GGC
[ENA]
¡û
>C025633
AE000512
Thermotogota
Thermotoga maritima MSB8 [AE000512]
202305
202380
+
Ala
CGC
-
¡û
>C025654
AE000512
Thermotogota
Thermotoga maritima MSB8 [AE000512]
1580343
1580418
+
Ala
GGC
-
¡û
>C025794
CP000702
Thermotogota
Thermotoga petrophila RKU-1 [CP000702]
1224165
1224090
-
Ala
GGC
[Ensembl]
¡û
>C025802
CP000702
Thermotogota
Thermotoga petrophila RKU-1 [CP000702]
741221
741146
-
Ala
CGC
[Ensembl]
¡û
>w019747
AAUK01000013
Thermotogota
Fervidobacterium nodosum Rt17-B1 [AAUK]
20278
20201
-
Ala
GGC
[ENA]
¡û
>WENV180014477
FQKF010022611
[FQKF] soil metagenome; Soil
77
2
-
Ala
GGC
[ENA]
¢þ
>W141070765
ASGQ01000004
Thermotogota
Thermotoga neapolitana LA10 [ASGQ]
218134
218059
-
Ala
CGC
[ENA]
¡û
>W141070770
ASGQ01000010
Thermotogota
Thermotoga neapolitana LA10 [ASGQ]
75086
75011
-
Ala
GGC
[ENA]
¡û
>W141082664
AUNF01000052
Thermotogota
Thermotoga sp. A7A [AUNF]
12909
12984
+
Ala
CGC
[ENA]
¡û
>W141082677
AUNF01000077
Thermotogota
Thermotoga sp. A7A [AUNF]
25828
25903
+
Ala
GGC
[ENA]
¡û
>WENV181285306
OFGS01000001
[OFGS] hot springs metagenome; Water and soil
232061
232136
+
Ala
GGC
[ENA]
¢þ
>WENV181407859
OGCH01000139
[OGCH] hot springs metagenome; hot springs
5472
5397
-
Ala
GGC
[ENA]
¢þ
>WENV181407961
OGCH01000294
[OGCH] hot springs metagenome; hot springs
6538
6613
+
Ala
CGC
[ENA]
¢þ
>C08004990
CP000771
Thermotogota
Fervidobacterium nodosum Rt17-B1 [CP000771]
1678028
1677956
-
Ala
GGC
[Ensembl]
¡û
>C08010894
CP000969
Thermotogota
Thermotoga sp. RQ2 [CP000969]
1284250
1284325
+
Ala
GGC
[Ensembl]
¡û
>C08010913
CP000969
Thermotogota
Thermotoga sp. RQ2 [CP000969]
776909
776837
-
Ala
CGC
[Ensembl]
¡û
>WENV170676178
LDZR01001299
[LDZR] terrestrial metagenome; oil reservoir sample K2
8741
8666
-
Ala
CGC
[ENA]
¢þ
>WENV170676765
LDZS01002191
[LDZS] terrestrial metagenome; oil reservoir sample K3
726
801
+
Ala
GGC
[ENA]
¢þ
>WENV170676782
LDZS01002342
[LDZS] terrestrial metagenome; oil reservoir sample K3
641
716
+
Ala
CGC
[ENA]
¢þ
>W09106559
AAWB01000011
Thermotogota
Thermotoga petrophila RKU-1 [AAWB]
52005
52080
+
Ala
CGC
[ENA]
¡û
>W09107413
ABIJ01000003
Thermotogota
Thermotoga sp. RQ2 [ABIJ]
38961
38886
-
Ala
CGC
[ENA]
¡û
>W09107431
ABIJ01000007
Thermotogota
Thermotoga sp. RQ2 [ABIJ]
73679
73604
-
Ala
GGC
[ENA]
¡û
>W09112219
ABXR01000011
Thermotogota
Marinitoga piezophila KA3 [ABXR]
76014
75939
-
Ala
GGC
[ENA]
¡û
>W09112244
ABXR01000030
Thermotogota
Marinitoga piezophila KA3 [ABXR]
39383
39308
-
Ala
CGC
[ENA]
¡û
>C09110659
CP000916
Thermotogota
Thermotoga neapolitana DSM 4359 [CP000916]
869598
869523
-
Ala
GGC
[Ensembl]
¡û
>C09110665
CP000916
Thermotogota
Thermotoga neapolitana DSM 4359 [CP000916]
490195
490120
-
Ala
CGC
[Ensembl]
¡û
>C141011535
CP007013
Thermotogota
Thermotoga maritima MSB8 [CP007013]
1234907
1234832
-
Ala
GGC
-
¡û
>C141011544
CP007013
Thermotogota
Thermotoga maritima MSB8 [CP007013]
743314
743239
-
Ala
CGC
-
¡û
>W1910573564
JPMH01000005
Thermotogota
Fervidobacterium sp. SC_NGM5_G05 [JPMH]
28410
28485
+
Ala
GGC
[ENA]
¡û
>W1910635439
LNDD01000001
Thermotogota
Thermotoga sp. SG1 [LNDD]
253559
253484
-
Ala
CGC
[ENA]
¡û
>W1910635474
LNDD01000005
Thermotogota
Thermotoga sp. SG1 [LNDD]
53653
53578
-
Ala
GGC
[ENA]
¡û
>W1910635490
LNDE01000001
Thermotogota
Thermotoga sp. KOL6 [LNDE]
602274
602199
-
Ala
GGC
[ENA]
¡û
>W1910635516
LNDE01000003
Thermotogota
Thermotoga sp. KOL6 [LNDE]
154702
154777
+
Ala
CGC
[ENA]
¡û
>C151004270
CP003408
Thermotogota
Thermotoga sp. 2812B [CP003408]
1268931
1269006
+
Ala
GGC
[Ensembl]
¡û
>C151004289
CP003408
Thermotogota
Thermotoga sp. 2812B [CP003408]
781676
781601
-
Ala
CGC
[Ensembl]
¡û
>C151004326
CP003409
Thermotogota
Thermotoga sp. Cell2 [CP003409]
1222494
1222419
-
Ala
GGC
[Ensembl]
¡û
>C151004335
CP003409
Thermotogota
Thermotoga sp. Cell2 [CP003409]
726333
726258
-
Ala
CGC
[Ensembl]
¡û
>C151030643
CP007633
Thermotogota
Thermotoga sp. RQ7 [CP007633]
1142086
1142011
-
Ala
GGC
[Ensembl]
¡û
>C151030649
CP007633
Thermotogota
Thermotoga sp. RQ7 [CP007633]
767319
767244
-
Ala
CGC
[Ensembl]
¡û
>C151074593
CP010967
Thermotogota
Thermotoga maritima Tma200 [CP010967]
202308
202383
+
Ala
CGC
[Ensembl]
¡û
>C151074614
CP010967
Thermotogota
Thermotoga maritima Tma200 [CP010967]
1570331
1570406
+
Ala
GGC
[Ensembl]
¡û
>C151076947
CP011107
Thermotogota
Thermotoga maritima MSB8 [CP011107]
202308
202383
+
Ala
CGC
[Ensembl]
¡û
>C151076968
CP011107
Thermotogota
Thermotoga maritima MSB8 [CP011107]
1580359
1580434
+
Ala
GGC
[Ensembl]
¡û
>C151076993
CP011108
Thermotogota
Thermotoga maritima Tma100 [CP011108]
202308
202383
+
Ala
CGC
[Ensembl]
¡û
>C151077014
CP011108
Thermotogota
Thermotoga maritima Tma100 [CP011108]
1580359
1580434
+
Ala
GGC
[Ensembl]
¡û
>W10105816
ACXW01000001
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
199413
199488
+
Ala
CGC
[ENA]
¡û
>W10105851
ACXW01000008
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
60318
60393
+
Ala
GGC
[ENA]
¡û
>C10113488
CP001839
Thermotogota
Thermotoga petrophila RKU-10 [CP001839]
853590
853665
+
Ala
CGC
[Ensembl]
¡û
>C10113506
CP001839
Thermotogota
Thermotoga petrophila RKU-10 [CP001839]
1244453
1244378
-
Ala
GGC
[Ensembl]
¡û
>W11108136
ACXW01000001
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
199413
199488
+
Ala
CGC
[ENA]
¡û
>W11108171
ACXW01000008
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
60318
60393
+
Ala
GGC
[ENA]
¡û
>W11180798
AGIJ01000002
Thermotogota
Thermotoga maritima MSB8 [AGIJ]
227858
227933
+
Ala
GGC
[ENA]
¡û
>W11180814
AGIJ01000003
Thermotogota
Thermotoga maritima MSB8 [AGIJ]
199125
199200
+
Ala
CGC
[ENA]
¡û
>W121062183
AJII01000007
Thermotogota
Thermotoga sp. EMP [AJII]
209478
209403
-
Ala
CGC
[ENA]
¡û
>W121062193
AJII01000011
Thermotogota
Thermotoga sp. EMP [AJII]
149577
149652
+
Ala
GGC
[ENA]
¡û
>C131012483
CP004077
Thermotogota
Thermotoga maritima MSB8 [CP004077]
202308
202383
+
Ala
CGC
-
¡û
>C131012504
CP004077
Thermotogota
Thermotoga maritima MSB8 [CP004077]
1580361
1580436
+
Ala
GGC
-
¡û
>W1610540325
JSFG01000006
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
52958
52883
-
Ala
GGC
[ENA]
¡û
>W1610540359
JSFG01000015
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
170662
170587
-
Ala
CGC
[ENA]
¡û
>W1610540372
JSFH01000004
Thermotogota
Thermotoga sp. Mc24 [JSFH]
97598
97523
-
Ala
CGC
[ENA]
¡û
>W1610540382
JSFH01000008
Thermotogota
Thermotoga sp. Mc24 [JSFH]
58315
58390
+
Ala
GGC
[ENA]
¡û
>W1610540417
JSFI01000005
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
52747
52672
-
Ala
GGC
[ENA]
¡û
>W1610540451
JSFI01000014
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
158935
158860
-
Ala
CGC
[ENA]
¡û
>W1610540463
JSFJ01000009
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
84971
85046
+
Ala
CGC
[ENA]
¡û
>W1610540497
JSFJ01000017
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
49729
49804
+
Ala
GGC
[ENA]
¡û
>W1610612924
LGFG01000051
Thermotogota
Thermotoga petrophila naphthophila [LGFG]
8741
8666
-
Ala
CGC
[ENA]
¡û
>W1610613155
LGFM01000060
Thermotogota
Thermotoga sp. 47_83 [LGFM]
726
801
+
Ala
GGC
[ENA]
¡û
>W1610613172
LGFM01000211
Thermotogota
Thermotoga sp. 47_83 [LGFM]
641
716
+
Ala
CGC
[ENA]
¡û
>W1710593329
FRDJ01000001
Thermotogota
Fervidobacterium gondwanense DSM 13020 [FRDJ]
226872
226797
-
Ala
GGC
[ENA]
¡û
>W1710643346
JSFG01000006
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
52958
52883
-
Ala
GGC
[ENA]
¡û
>W1710643380
JSFG01000015
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
170662
170587
-
Ala
CGC
[ENA]
¡û
>W1710643393
JSFH01000004
Thermotogota
Thermotoga sp. Mc24 [JSFH]
97598
97523
-
Ala
CGC
[ENA]
¡û
>W1710643403
JSFH01000008
Thermotogota
Thermotoga sp. Mc24 [JSFH]
58315
58390
+
Ala
GGC
[ENA]
¡û
>W1710643438
JSFI01000005
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
52747
52672
-
Ala
GGC
[ENA]
¡û
>W1710643472
JSFI01000014
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
158935
158860
-
Ala
CGC
[ENA]
¡û
>W1710643484
JSFJ01000009
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
84971
85046
+
Ala
CGC
[ENA]
¡û
>W1710643518
JSFJ01000017
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
49729
49804
+
Ala
GGC
[ENA]
¡û
>W1710734206
LGFG01000051
Thermotogota
Thermotoga petrophila naphthophila [LGFG]
8741
8666
-
Ala
CGC
[ENA]
¡û
>W1710734362
LGFM01000060
Thermotogota
Thermotoga sp. 47_83 [LGFM]
726
801
+
Ala
GGC
[ENA]
¡û
>W1710734379
LGFM01000211
Thermotogota
Thermotoga sp. 47_83 [LGFM]
641
716
+
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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