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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.256122 (35 seq.)
>C025656
AE000512
Thermotogota
Thermotoga maritima MSB8 [AE000512]
1580521
1580596
+
Lys
CTT
-
¡û
>C025796
CP000702
Thermotogota
Thermotoga petrophila RKU-1 [CP000702]
1223987
1223912
-
Lys
CTT
[Ensembl]
¡û
>W141070772
ASGQ01000010
Thermotogota
Thermotoga neapolitana LA10 [ASGQ]
74911
74836
-
Lys
CTT
[ENA]
¡û
>W141082679
AUNF01000077
Thermotogota
Thermotoga sp. A7A [AUNF]
26006
26081
+
Lys
CTT
[ENA]
¡û
>WENV181407861
OGCH01000139
[OGCH] hot springs metagenome; hot springs
5294
5219
-
Lys
CTT
[ENA]
¢þ
>C08010896
CP000969
Thermotogota
Thermotoga sp. RQ2 [CP000969]
1284428
1284503
+
Lys
CTT
[Ensembl]
¡û
>WENV170676767
LDZS01002191
[LDZS] terrestrial metagenome; oil reservoir sample K3
904
979
+
Lys
CTT
[ENA]
¢þ
>W09107433
ABIJ01000007
Thermotogota
Thermotoga sp. RQ2 [ABIJ]
73501
73426
-
Lys
CTT
[ENA]
¡û
>W09112221
ABXR01000011
Thermotogota
Marinitoga piezophila KA3 [ABXR]
75836
75761
-
Lys
CTT
[ENA]
¡û
>C141011537
CP007013
Thermotogota
Thermotoga maritima MSB8 [CP007013]
1234729
1234654
-
Lys
CTT
-
¡û
>W1910635476
LNDD01000005
Thermotogota
Thermotoga sp. SG1 [LNDD]
53477
53402
-
Lys
CTT
[ENA]
¡û
>W1910635492
LNDE01000001
Thermotogota
Thermotoga sp. KOL6 [LNDE]
602097
602022
-
Lys
CTT
[ENA]
¡û
>C09110661
CP000916
Thermotogota
Thermotoga neapolitana DSM 4359 [CP000916]
869422
869347
-
Lys
CTT
[Ensembl]
¡û
>C151004272
CP003408
Thermotogota
Thermotoga sp. 2812B [CP003408]
1269109
1269184
+
Lys
CTT
[Ensembl]
¡û
>C151004328
CP003409
Thermotogota
Thermotoga sp. Cell2 [CP003409]
1222316
1222241
-
Lys
CTT
[Ensembl]
¡û
>C151030645
CP007633
Thermotogota
Thermotoga sp. RQ7 [CP007633]
1141910
1141835
-
Lys
CTT
[Ensembl]
¡û
>C151074616
CP010967
Thermotogota
Thermotoga maritima Tma200 [CP010967]
1570509
1570584
+
Lys
CTT
[Ensembl]
¡û
>C151076970
CP011107
Thermotogota
Thermotoga maritima MSB8 [CP011107]
1580537
1580612
+
Lys
CTT
[Ensembl]
¡û
>C151077016
CP011108
Thermotogota
Thermotoga maritima Tma100 [CP011108]
1580537
1580612
+
Lys
CTT
[Ensembl]
¡û
>W10105853
ACXW01000008
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
60496
60571
+
Lys
CTT
[ENA]
¡û
>C10113508
CP001839
Thermotogota
Thermotoga petrophila RKU-10 [CP001839]
1244275
1244200
-
Lys
CTT
[Ensembl]
¡û
>W11108173
ACXW01000008
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
60496
60571
+
Lys
CTT
[ENA]
¡û
>W11180800
AGIJ01000002
Thermotogota
Thermotoga maritima MSB8 [AGIJ]
228036
228111
+
Lys
CTT
[ENA]
¡û
>W121062195
AJII01000011
Thermotogota
Thermotoga sp. EMP [AJII]
149755
149830
+
Lys
CTT
[ENA]
¡û
>C131012506
CP004077
Thermotogota
Thermotoga maritima MSB8 [CP004077]
1580539
1580614
+
Lys
CTT
-
¡û
>W1610540327
JSFG01000006
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
52780
52705
-
Lys
CTT
[ENA]
¡û
>W1610540384
JSFH01000008
Thermotogota
Thermotoga sp. Mc24 [JSFH]
58493
58568
+
Lys
CTT
[ENA]
¡û
>W1610540419
JSFI01000005
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
52569
52494
-
Lys
CTT
[ENA]
¡û
>W1610540499
JSFJ01000017
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
49907
49982
+
Lys
CTT
[ENA]
¡û
>W1610613157
LGFM01000060
Thermotogota
Thermotoga sp. 47_83 [LGFM]
904
979
+
Lys
CTT
[ENA]
¡û
>W1710643348
JSFG01000006
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
52780
52705
-
Lys
CTT
[ENA]
¡û
>W1710643405
JSFH01000008
Thermotogota
Thermotoga sp. Mc24 [JSFH]
58493
58568
+
Lys
CTT
[ENA]
¡û
>W1710643440
JSFI01000005
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
52569
52494
-
Lys
CTT
[ENA]
¡û
>W1710643520
JSFJ01000017
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
49907
49982
+
Lys
CTT
[ENA]
¡û
>W1710734364
LGFM01000060
Thermotogota
Thermotoga sp. 47_83 [LGFM]
904
979
+
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK