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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.256127 (38 seq.)
>C025637
AE000512
Thermotogota
Thermotoga maritima MSB8 [AE000512]
473921
473996
+
Met
CAT
-
¡û
>C025806
CP000702
Thermotogota
Thermotoga petrophila RKU-1 [CP000702]
461588
461513
-
Met
CAT
[Ensembl]
¡û
>W141070754
ASGQ01000003
Thermotogota
Thermotoga neapolitana LA10 [ASGQ]
91362
91287
-
Met
CAT
[ENA]
¡û
>WENV181408655
OGCH01007712
[OGCH] hot springs metagenome; hot springs
126
51
-
Met
CAT
[ENA]
¢þ
>C08010917
CP000969
Thermotogota
Thermotoga sp. RQ2 [CP000969]
479649
479577
-
Met
CAT
[Ensembl]
¡û
>WENV170676167
LDZR01001290
[LDZR] terrestrial metagenome; oil reservoir sample K2
5582
5657
+
Met
CAT
[ENA]
¢þ
>WENV170676752
LDZS01002155
[LDZS] terrestrial metagenome; oil reservoir sample K3
7294
7369
+
Met
CAT
[ENA]
¢þ
>W09106567
AAWB01000023
Thermotogota
Thermotoga petrophila RKU-1 [AAWB]
29944
29869
-
Met
CAT
[ENA]
¡û
>W09107435
ABIJ01000010
Thermotogota
Thermotoga sp. RQ2 [ABIJ]
28110
28035
-
Met
CAT
[ENA]
¡û
>W09112227
ABXR01000015
Thermotogota
Marinitoga piezophila KA3 [ABXR]
50766
50841
+
Met
CAT
[ENA]
¡û
>C141011548
CP007013
Thermotogota
Thermotoga maritima MSB8 [CP007013]
471696
471621
-
Met
CAT
-
¡û
>W1910635443
LNDD01000003
Thermotogota
Thermotoga sp. SG1 [LNDD]
24530
24605
+
Met
CAT
[ENA]
¡û
>W1910635501
LNDE01000002
Thermotogota
Thermotoga sp. KOL6 [LNDE]
242465
242540
+
Met
CAT
[ENA]
¡û
>C09110669
CP000916
Thermotogota
Thermotoga neapolitana DSM 4359 [CP000916]
214921
214846
-
Met
CAT
[Ensembl]
¡û
>C151004293
CP003408
Thermotogota
Thermotoga sp. 2812B [CP003408]
479512
479437
-
Met
CAT
[Ensembl]
¡û
>C151004339
CP003409
Thermotogota
Thermotoga sp. Cell2 [CP003409]
471003
470928
-
Met
CAT
[Ensembl]
¡û
>C151030653
CP007633
Thermotogota
Thermotoga sp. RQ7 [CP007633]
492376
492301
-
Met
CAT
[Ensembl]
¡û
>C151074597
CP010967
Thermotogota
Thermotoga maritima Tma200 [CP010967]
473926
474001
+
Met
CAT
[Ensembl]
¡û
>C151076951
CP011107
Thermotogota
Thermotoga maritima MSB8 [CP011107]
473926
474001
+
Met
CAT
[Ensembl]
¡û
>C151076997
CP011108
Thermotogota
Thermotoga maritima Tma100 [CP011108]
473926
474001
+
Met
CAT
[Ensembl]
¡û
>W10105831
ACXW01000003
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
49190
49265
+
Met
CAT
[ENA]
¡û
>C10113478
CP001839
Thermotogota
Thermotoga petrophila RKU-10 [CP001839]
228190
228265
+
Met
CAT
[Ensembl]
¡û
>W11108151
ACXW01000003
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
49190
49265
+
Met
CAT
[ENA]
¡û
>W11180781
AGIJ01000001
Thermotogota
Thermotoga maritima MSB8 [AGIJ]
859595
859520
-
Met
CAT
[ENA]
¡û
>W121062162
AJII01000002
Thermotogota
Thermotoga sp. EMP [AJII]
17383
17458
+
Met
CAT
[ENA]
¡û
>C131012487
CP004077
Thermotogota
Thermotoga maritima MSB8 [CP004077]
473926
474001
+
Met
CAT
-
¡û
>W1610540347
JSFG01000014
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
52270
52195
-
Met
CAT
[ENA]
¡û
>W1610540402
JSFH01000012
Thermotogota
Thermotoga sp. Mc24 [JSFH]
313489
313414
-
Met
CAT
[ENA]
¡û
>W1610540438
JSFI01000010
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
289837
289762
-
Met
CAT
[ENA]
¡û
>W1610540471
JSFJ01000012
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
49307
49382
+
Met
CAT
[ENA]
¡û
>W1610612913
LGFG01000042
Thermotogota
Thermotoga petrophila naphthophila [LGFG]
5582
5657
+
Met
CAT
[ENA]
¡û
>W1610613142
LGFM01000024
Thermotogota
Thermotoga sp. 47_83 [LGFM]
7294
7369
+
Met
CAT
[ENA]
¡û
>W1710643368
JSFG01000014
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
52270
52195
-
Met
CAT
[ENA]
¡û
>W1710643423
JSFH01000012
Thermotogota
Thermotoga sp. Mc24 [JSFH]
313489
313414
-
Met
CAT
[ENA]
¡û
>W1710643459
JSFI01000010
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
289837
289762
-
Met
CAT
[ENA]
¡û
>W1710643492
JSFJ01000012
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
49307
49382
+
Met
CAT
[ENA]
¡û
>W1710734195
LGFG01000042
Thermotogota
Thermotoga petrophila naphthophila [LGFG]
5582
5657
+
Met
CAT
[ENA]
¡û
>W1710734349
LGFM01000024
Thermotogota
Thermotoga sp. 47_83 [LGFM]
7294
7369
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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