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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.256153 (18 seq.)
>A171002787
CP003117
Euryarchaeota
Methanothrix harundinacea 6Ac [CP003117]
494916
494988
+
Asn
GTT
-
¡û
>A171006813
CP017921
Euryarchaeota
Methanohalophilus halophilus Z-7982 [CP017921]
1172267
1172194
-
Asn
GTT
-
¡û
>A179000240
CP002565
Euryarchaeota
Methanothrix soehngenii GP6 [CP002565]
682868
682781
-
Asn
GTT
-
¡û
>A172000021
CP002565
Euryarchaeota
Methanothrix soehngenii GP6 [CP002565]
682868
682781
-
Asn
GTT
-
¡û
>WENV181229849
OFEK01000087
[OFEK] activated sludge metagenome; Anaerobic digester
74232
74304
+
Asn
GTT
[ENA]
¢þ
>WENV181413229
OGCK01042049
[OGCK] hot springs metagenome; hot spring sediment
357
285
-
Asn
GTT
[ENA]
¢þ
>At0983
CP000300
Euryarchaeota
Methanococcoides burtonii DSM 6242 [CP000300]
2530918
2530990
+
Asn
GTT
[Ensembl]
¡û
>WENV170651562
JRYF01078949
[JRYF] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
270
342
+
Asn
GTT
[ENA]
¢þ
>WENV170670334
LAHT01002615
[LAHT] activated sludge metagenome; Sample C-4; Sludge from methanogenic chamber (fourth chamber) of Anaerobic Baffled Reactor over
2162
2234
+
Asn
GTT
[ENA]
¢þ
>WENV170670814
LAHU01001836
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
489
561
+
Asn
GTT
[ENA]
¢þ
>WENV170677474
LDZT01005542
[LDZT] terrestrial metagenome; oil reservoir sample SB1
10314
10386
+
Asn
GTT
[ENA]
¢þ
>WENV170678665
LDZU01003570
[LDZU] terrestrial metagenome; oil reservoir sample SB2
17716
17644
-
Asn
GTT
[ENA]
¢þ
>W1911633782
PVBU01000015
Euryarchaeota
Methanohalophilus euhalobius DSM 10369 [PVBU]
20893
20966
+
Asn
GTT
[ENA]
¡û
>W1610613378
LGFT01000054
Euryarchaeota
Methanothrix harundinacea [LGFT]
10314
10386
+
Asn
GTT
[ENA]
¡û
>W1610614380
LGHB01000045
Euryarchaeota
Methanothrix harundinacea [LGHB]
17716
17644
-
Asn
GTT
[ENA]
¡û
>W1610945906
LUYE01000004
Euryarchaeota
Methanosarcinales archaeon Methan_01 [LUYE]
27805
27877
+
Asn
GTT
[ENA]
¡û
>W1610945953
LUYF01000072
Euryarchaeota
Methanosarcinales archaeon Methan_02 [LUYF]
5850
5778
-
Asn
GTT
[ENA]
¡û
>W1611052499
MAFX01000016
Euryarchaeota
Methanohalophilus sp. DAL1 [MAFX]
33658
33731
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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