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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.256189 (25 seq.)
>C171100143
CP019799
Gammaproteobacteria
Cellvibrio sp. PSBB023 [CP019799]
1516874
1516799
-
Val
TAC
-
¡û
>C171100146
CP019799
Gammaproteobacteria
Cellvibrio sp. PSBB023 [CP019799]
1074213
1074138
-
Val
TAC
-
¡û
>C171118506
CP021382
Gammaproteobacteria
Cellvibrio sp. PSBB006 [CP021382]
372948
373023
+
Val
TAC
-
¡û
>C171118509
CP021382
Gammaproteobacteria
Cellvibrio sp. PSBB006 [CP021382]
1050851
1050926
+
Val
TAC
-
¡û
>WENV180039123
LLBY010028634
[LLBY] soil metagenome; soil from tomato rhizosphere
2033
1958
-
Val
TAC
[ENA]
¢þ
>WENV180040475
LLBY010975322
[LLBY] soil metagenome; soil from tomato rhizosphere
74
1
-
Val
TAC
[ENA]
¢þ
>WENV180040931
LLBZ010025250
[LLBZ] soil metagenome; soil from tomato rhizosphere
5105
5030
-
Val
TAC
[ENA]
¢þ
>WENV180591519
OCOV01035659
[OCOV] marine metagenome; ENVO:01000301
60
135
+
Val
TAC
[ENA]
¢þ
>WENV181401017
OFSF01042573
[OFSF] wastewater metagenome; Exp Tend VB 100WW
101
176
+
Val
TAC
[ENA]
¢þ
>WENV181416982
OGCL01192979
[OGCL] hot springs metagenome; Hot spring water
129
54
-
Val
TAC
[ENA]
¢þ
>WENV181856916
OGWN01027329
[OGWN] freshwater metagenome; freshwater
424
349
-
Val
TAC
[ENA]
¢þ
>C08003231
CP000934
Gammaproteobacteria
Cellvibrio japonicus Ueda107 [CP000934]
2232368
2232443
+
Val
TAC
[Ensembl]
¡û
>C08003244
CP000934
Gammaproteobacteria
Cellvibrio japonicus Ueda107 [CP000934]
2517952
2517880
-
Val
TAC
[Ensembl]
¡û
>W1910911050
NHNI01000001
Gammaproteobacteria
Cellvibrio mixtus PSBB022 [NHNI]
420437
420362
-
Val
TAC
[ENA]
¡û
>W1910911066
NHNI01000002
Gammaproteobacteria
Cellvibrio mixtus PSBB022 [NHNI]
1150767
1150692
-
Val
TAC
[ENA]
¡û
>W1510018777
BBUL01000087
Gammaproteobacteria
Cellvibrio sp. OA-2007 [BBUL]
97439
97514
+
Val
TAC
[ENA]
¡û
>W1510018803
BBUL01000097
Gammaproteobacteria
Cellvibrio sp. OA-2007 [BBUL]
330823
330748
-
Val
TAC
[ENA]
¡û
>W1511548624
JZSC01000003
Gammaproteobacteria
Cellvibrio sp. pealriver [JZSC]
1220840
1220915
+
Val
TAC
[ENA]
¡û
>W1511548637
JZSC01000003
Gammaproteobacteria
Cellvibrio sp. pealriver [JZSC]
1448272
1448197
-
Val
TAC
[ENA]
¡û
>W1610005700
ALBT01000008
Gammaproteobacteria
Cellvibrio mixtus subsp. mixtus J3-8 [ALBT]
145812
145887
+
Val
TAC
[ENA]
¡û
>W1610005704
ALBT01000011
Gammaproteobacteria
Cellvibrio mixtus subsp. mixtus J3-8 [ALBT]
31576
31501
-
Val
TAC
[ENA]
¡û
>W121045168
AICM01000003
Gammaproteobacteria
Cellvibrio sp. BR [AICM]
217077
217152
+
Val
TAC
[ENA]
¡û
>W121045177
AICM01000003
Gammaproteobacteria
Cellvibrio sp. BR [AICM]
540026
539951
-
Val
TAC
[ENA]
¡û
>W1710005461
ALBT01000008
Gammaproteobacteria
Cellvibrio mixtus subsp. mixtus J3-8 [ALBT]
145812
145887
+
Val
TAC
[ENA]
¡û
>W1710005465
ALBT01000011
Gammaproteobacteria
Cellvibrio mixtus subsp. mixtus J3-8 [ALBT]
31576
31501
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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