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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.256219 (13 seq.)
>C171032888
CP014674
Alphaproteobacteria
Kozakia baliensis DSM 14400 [CP014674]
2535884
2535809
-
Lys
TTT
-
¡û
>C171032951
CP014681
Alphaproteobacteria
Kozakia baliensis NBRC 16680 [CP014681]
2194401
2194326
-
Lys
TTT
-
¡û
>C171033116
CP014691
Alphaproteobacteria
Neoasaia chiangmaiensis NBRC 101099 [CP014691]
1761427
1761352
-
Lys
TTT
-
¡û
>W141200363
AYXS01000034
Alphaproteobacteria
Asaia sp. SF2.1 [AYXS]
8430
8355
-
Lys
TTT
[ENA]
¡û
>W141226080
BAJT01000012
Alphaproteobacteria
Asaia astilbis JCM 15831 [BAJT]
92719
92794
+
Lys
TTT
[ENA]
¡û
>W141226158
BAJV01000005
Alphaproteobacteria
Asaia prunellae JCM 25354 [BAJV]
10107
10032
-
Lys
TTT
[ENA]
¡û
>W141227266
BAKW01000012
Alphaproteobacteria
Asaia platycodi JCM 25414 [BAKW]
91598
91673
+
Lys
TTT
[ENA]
¡û
>W141247955
CBLX010000024
Alphaproteobacteria
Asaia bogorensis SF2.1 [CBLX]
14486
14411
-
Lys
TTT
[ENA]
¡û
>C191157825
CP038141
Alphaproteobacteria
Swingsia samuiensis AH83 [CP038141]
1081286
1081211
-
Lys
TTT
-
¡û
>W141726085
JNAB01000010
Alphaproteobacteria
Kozakia baliensis [JNAB]
51255
51330
+
Lys
TTT
[ENA]
¡û
>W1911597818
PNQZ01000005
Alphaproteobacteria
Asaia sp. W19 [PNQZ]
48725
48650
-
Lys
TTT
[ENA]
¡û
>WENV11100098
ADWX01145647
Ant fungus garden metagenome, Atta colombica fungus garden
474
399
-
Lys
TTT
[ENA]
¡û
>C161001090
AP014690
Alphaproteobacteria
Asaia bogorensis NBRC 16594 [AP014690]
2890640
2890715
+
Lys
TTT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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