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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.256448 (24 seq.)
>W1710806093
LKAQ01000001
Thermodesulfobacteriota
Pseudodesulfovibrio hydrargyri dechloracetivorans [LKAQ]
147226
147301
+
Asn
GTT
[ENA]
¡û
>W131215462
ATVA01000013
Thermodesulfobacteriota
Paucidesulfovibrio longus DSM 6739 [ATVA]
320354
320429
+
Asn
GTT
[ENA]
¡û
>WENV180043782
LQAI01019457
[LQAI] bioreactor metagenome; bioreactor_5 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
370
295
-
Asn
GTT
[ENA]
¢þ
>WENV180043783
LQAI01019457
[LQAI] bioreactor metagenome; bioreactor_5 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
118
43
-
Asn
GTT
[ENA]
¢þ
>WENV180044032
LQAJ01000450
[LQAJ] bioreactor metagenome; bioreactor_6 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
7848
7773
-
Asn
GTT
[ENA]
¢þ
>WENV180044033
LQAJ01000450
[LQAJ] bioreactor metagenome; bioreactor_6 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
7597
7522
-
Asn
GTT
[ENA]
¢þ
>W141277878
JAEX01000014
Thermodesulfobacteriota
Desulfocurvus vexinensis DSM 17965 [JAEX]
48045
48120
+
Asn
GTT
[ENA]
¡û
>WENV183705945
PDWI01002694
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
8319
8244
-
Asn
GTT
[ENA]
¢þ
>WENV183746864
PPCM01000024
[PPCM] marine sediment metagenome; marine sediment
87118
87043
-
Asn
GTT
[ENA]
¢þ
>WENV170419813
CEUM01137962
[CEUM] marine metagenome genome assembly TARA_123_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
26487
26562
+
Asn
GTT
[ENA]
¢þ
>WENV170438217
CEUU01107468
[CEUU] marine metagenome genome assembly TARA_122_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
4246
4171
-
Asn
GTT
[ENA]
¢þ
>WENV170440314
CEUV01088424
[CEUV] marine metagenome genome assembly TARA_123_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
3087
3012
-
Asn
GTT
[ENA]
¢þ
>WENV170895352
MDTD01078053
[MDTD] marine metagenome; seawater
5213
5288
+
Asn
GTT
[ENA]
¢þ
>C181227019
LT907975
Thermodesulfobacteriota
Pseudodesulfovibrio profundus 500-1 [LT907975]
233021
232946
-
Asn
GTT
-
¡û
>C191000279
AP017378
Thermodesulfobacteriota
Desulfovibrio ferrophilus IS5 [AP017378]
364654
364579
-
Asn
GTT
-
¡û
>W1911738010
QTZO01000004
Thermodesulfobacteriota
Pseudodesulfovibrio sp. S3 [QTZO]
299306
299231
-
Asn
GTT
[ENA]
¡û
>W10111368
ADDI01000005
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [ADDI]
67052
66977
-
Asn
GTT
[ENA]
¡û
>C11106880
CP002431
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [CP002431]
1567460
1567385
-
Asn
GTT
[Ensembl]
¡û
>W11114311
ADDI01000005
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [ADDI]
67052
66977
-
Asn
GTT
[ENA]
¡û
>W11149106
AEUJ01000002
Thermodesulfobacteriota
Pseudodesulfovibrio mercurii ND132 [AEUJ]
27522
27597
+
Asn
GTT
[ENA]
¡û
>C121008969
CP003220
Thermodesulfobacteriota
Pseudodesulfovibrio mercurii ND132 [CP003220]
685197
685272
+
Asn
GTT
[Ensembl]
¡û
>C161068276
CP014206
Thermodesulfobacteriota
Pseudodesulfovibrio indicus J2 [CP014206]
2505627
2505552
-
Asn
GTT
[Ensembl]
¡û
>C131017957
FO203427
Thermodesulfobacteriota
Pseudodesulfovibrio piezophilus C1TLV30 type strain: C1TLV30 [FO203427]
197671
197596
-
Asn
GTT
[Ensembl]
¡û
>W1710602298
FUYC01000003
Thermodesulfobacteriota
Paucidesulfovibrio gracilis DSM 16080 [FUYC]
152534
152459
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK