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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.256449 (26 seq.)
>W1710806098
LKAQ01000001
Thermodesulfobacteriota
Pseudodesulfovibrio hydrargyri dechloracetivorans [LKAQ]
484623
484698
+
His
GTG
[ENA]
¡û
>W131222881
AUBP01000030
Thermodesulfobacteriota
Desulfovibrio inopinatus DSM 10711 [AUBP]
39041
39116
+
His
GTG
[ENA]
¡û
>C171100864
CP019913
Thermodesulfobacteriota
Desulfococcus multivorans DSM 2059 [CP019913]
4318872
4318947
+
His
GTG
-
¡û
>W131160992
AQXE01000001
Thermodesulfobacteriota
Desulfovibrio oxyclinae DSM 11498 [AQXE]
119631
119556
-
His
GTG
[ENA]
¡û
>W131224580
AUCX01000014
Thermodesulfobacteriota
Maridesulfovibrio bastinii DSM 16055 [AUCX]
129793
129868
+
His
GTG
[ENA]
¡û
>WENV180043338
LQAH01031993
[LQAH] bioreactor metagenome; bioreactor_4 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
237
312
+
His
GTG
[ENA]
¢þ
>WENV180043546
LQAI01000561
[LQAI] bioreactor metagenome; bioreactor_5 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
585
660
+
His
GTG
[ENA]
¢þ
>WENV180044008
LQAJ01000252
[LQAJ] bioreactor metagenome; bioreactor_6 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
2209
2134
-
His
GTG
[ENA]
¢þ
>WENV180345707
OBLN01002947
[OBLN] sediment metagenome; sediment
3935
3860
-
His
GTG
[ENA]
¢þ
>W141277848
JAEX01000001
Thermodesulfobacteriota
Desulfocurvus vexinensis DSM 17965 [JAEX]
458529
458454
-
His
GTG
[ENA]
¡û
>WENV183707586
PDWI01009202
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
8111
8186
+
His
GTG
[ENA]
¢þ
>C191000243
AP017378
Thermodesulfobacteriota
Desulfovibrio ferrophilus IS5 [AP017378]
1810730
1810805
+
His
GTG
-
¡û
>W141701578
JMKT01000010
Thermodesulfobacteriota
Desulfonatronovibrio hydrogenovorans DSM 9292 [JMKT]
134307
134382
+
His
GTG
[ENA]
¡û
>W1911738023
QTZO01000008
Thermodesulfobacteriota
Pseudodesulfovibrio sp. S3 [QTZO]
125357
125282
-
His
GTG
[ENA]
¡û
>SRA1049836
SRR035095.145298
454 Sequencing (SRP001816)
536
461
-
His
GTG
[SRA]
>W1510021728
BCAG01000003
Thermodesulfobacteriota
Desulfatitalea tepidiphila S28bF [BCAG]
97554
97629
+
His
GTG
[ENA]
¡û
>W10111355
ADDI01000001
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [ADDI]
224338
224263
-
His
GTG
[ENA]
¡û
>C11106884
CP002431
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [CP002431]
1323536
1323461
-
His
GTG
[Ensembl]
¡û
>W11114298
ADDI01000001
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [ADDI]
224338
224263
-
His
GTG
[ENA]
¡û
>W1511534112
JYNP01000036
Thermodesulfobacteriota
Desulfonatronovibrio magnus AHT22 [JYNP]
37985
37910
-
His
GTG
[ENA]
¡û
>W11149117
AEUJ01000003
Thermodesulfobacteriota
Pseudodesulfovibrio mercurii ND132 [AEUJ]
9960
10035
+
His
GTG
[ENA]
¡û
>C121008973
CP003220
Thermodesulfobacteriota
Pseudodesulfovibrio mercurii ND132 [CP003220]
1019594
1019669
+
His
GTG
[Ensembl]
¡û
>C161068280
CP014206
Thermodesulfobacteriota
Pseudodesulfovibrio indicus J2 [CP014206]
2128728
2128653
-
His
GTG
[Ensembl]
¡û
>W1610046082
BBCB01000175
Thermodesulfobacteriota
Salidesulfovibrio brasiliensis JCM 12178 [BBCB]
522
447
-
His
GTG
[ENA]
¡û
>C131017941
FO203427
Thermodesulfobacteriota
Pseudodesulfovibrio piezophilus C1TLV30 type strain: C1TLV30 [FO203427]
3363070
3362995
-
His
GTG
[Ensembl]
¡û
>W1710042878
BBCB01000175
Thermodesulfobacteriota
Salidesulfovibrio brasiliensis JCM 12178 [BBCB]
522
447
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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