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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.256452 (27 seq.)
>W1710806117
LKAQ01000004
Thermodesulfobacteriota
Pseudodesulfovibrio hydrargyri dechloracetivorans [LKAQ]
922561
922636
+
Glu
CTC
[ENA]
¡û
>W1711581851
MNUQ01000071
Thermodesulfobacteriota
Desulfovibrionaceae bacterium CG1_02_65_16 [MNUQ]
13858
13783
-
Glu
CTC
[ENA]
¡û
>WENV180042909
LQAG01012872
[LQAG] bioreactor metagenome; bioreactor_3 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
191
266
+
Glu
CTC
[ENA]
¢þ
>WENV180043630
LQAI01003041
[LQAI] bioreactor metagenome; bioreactor_5 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
1900
1975
+
Glu
CTC
[ENA]
¢þ
>WENV180044077
LQAJ01001852
[LQAJ] bioreactor metagenome; bioreactor_6 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
75
1
-
Glu
CTC
[ENA]
¢þ
>WENV180346754
OBLN01269504
[OBLN] sediment metagenome; sediment
2
77
+
Glu
CTC
[ENA]
¢þ
>WENV183709461
PDWI01028411
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
513
438
-
Glu
CTC
[ENA]
¢þ
>WENV183746932
PPCM01000046
[PPCM] marine sediment metagenome; marine sediment
215577
215502
-
Glu
CTC
[ENA]
¢þ
>WENV183747530
PPCM01004105
[PPCM] marine sediment metagenome; marine sediment
822
897
+
Glu
CTC
[ENA]
¢þ
>WENV170419703
CEUM01136299
[CEUM] marine metagenome genome assembly TARA_123_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2651
2726
+
Glu
CTC
[ENA]
¢þ
>WENV170438814
CEUU01251429
[CEUU] marine metagenome genome assembly TARA_122_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1544
1619
+
Glu
CTC
[ENA]
¢þ
>WENV170441295
CEUV01154691
[CEUV] marine metagenome genome assembly TARA_123_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
979
1054
+
Glu
CTC
[ENA]
¢þ
>WENV170470352
CEVF01250594
[CEVF] marine metagenome genome assembly TARA_124_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
190
115
-
Glu
CTC
[ENA]
¢þ
>WENV170896167
MDTD01091182
[MDTD] marine metagenome; seawater
45530
45605
+
Glu
CTC
[ENA]
¢þ
>C181227003
LT907975
Thermodesulfobacteriota
Pseudodesulfovibrio profundus 500-1 [LT907975]
2079994
2079919
-
Glu
CTC
-
¡û
>C191000258
AP017378
Thermodesulfobacteriota
Desulfovibrio ferrophilus IS5 [AP017378]
2758010
2757935
-
Glu
CTC
-
¡û
>W141776921
JOMJ01000004
Thermodesulfobacteriota
Desulfohalovibrio reitneri L21-Syr-AB [JOMJ]
44603
44528
-
Glu
CTC
[ENA]
¡û
>W1910547852
FZOC01000007
Thermodesulfobacteriota
Humidesulfovibrio mexicanus DSM 13116 [FZOC]
107243
107318
+
Glu
CTC
[ENA]
¡û
>W1911738028
QTZO01000010
Thermodesulfobacteriota
Pseudodesulfovibrio sp. S3 [QTZO]
31774
31849
+
Glu
CTC
[ENA]
¡û
>W10111401
ADDI01000056
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [ADDI]
1597
1672
+
Glu
CTC
[ENA]
¡û
>C11106857
CP002431
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [CP002431]
3477210
3477285
+
Glu
CTC
[Ensembl]
¡û
>W11114344
ADDI01000056
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [ADDI]
1597
1672
+
Glu
CTC
[ENA]
¡û
>W1511534117
JYNP01000040
Thermodesulfobacteriota
Desulfonatronovibrio magnus AHT22 [JYNP]
5525
5450
-
Glu
CTC
[ENA]
¡û
>W11149130
AEUJ01000005
Thermodesulfobacteriota
Pseudodesulfovibrio mercurii ND132 [AEUJ]
163183
163258
+
Glu
CTC
[ENA]
¡û
>C121008983
CP003220
Thermodesulfobacteriota
Pseudodesulfovibrio mercurii ND132 [CP003220]
2438455
2438530
+
Glu
CTC
[Ensembl]
¡û
>C161068290
CP014206
Thermodesulfobacteriota
Pseudodesulfovibrio indicus J2 [CP014206]
749996
749921
-
Glu
CTC
[Ensembl]
¡û
>C131017927
FO203427
Thermodesulfobacteriota
Pseudodesulfovibrio piezophilus C1TLV30 type strain: C1TLV30 [FO203427]
2374169
2374244
+
Glu
CTC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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