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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.256456 (27 seq.)
>W1710806137
LKAQ01000004
Thermodesulfobacteriota
Pseudodesulfovibrio hydrargyri dechloracetivorans [LKAQ]
1554679
1554604
-
Met
CAT
[ENA]
¡û
>W131161004
AQXE01000005
Thermodesulfobacteriota
Desulfovibrio oxyclinae DSM 11498 [AQXE]
78333
78258
-
Met
CAT
[ENA]
¡û
>W131215483
ATVA01000018
Thermodesulfobacteriota
Paucidesulfovibrio longus DSM 6739 [ATVA]
136811
136886
+
Met
CAT
[ENA]
¡û
>WENV180042856
LQAG01006902
[LQAG] bioreactor metagenome; bioreactor_3 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
90
165
+
Ile2
CAT
[ENA]
¢þ
>WENV180043505
LQAI01000132
[LQAI] bioreactor metagenome; bioreactor_5 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
13648
13723
+
Ile2
CAT
[ENA]
¢þ
>WENV180043984
LQAJ01000172
[LQAJ] bioreactor metagenome; bioreactor_6 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
21216
21291
+
Ile2
CAT
[ENA]
¢þ
>WENV180346687
OBLN01224734
[OBLN] sediment metagenome; sediment
13
88
+
Ile2
CAT
[ENA]
¢þ
>WENV183707288
PDWI01007734
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
10121
10196
+
Ile2
CAT
[ENA]
¢þ
>WENV183746961
PPCM01000071
[PPCM] marine sediment metagenome; marine sediment
148990
148915
-
Ile2
CAT
[ENA]
¢þ
>WENV170419195
CEUM01106584
[CEUM] marine metagenome genome assembly TARA_123_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
34733
34808
+
Met
CAT
[ENA]
¢þ
>WENV170438650
CEUU01214914
[CEUU] marine metagenome genome assembly TARA_122_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
233
308
+
Met
CAT
[ENA]
¢þ
>WENV170441003
CEUV01142583
[CEUV] marine metagenome genome assembly TARA_123_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
768
843
+
Met
CAT
[ENA]
¢þ
>WENV170469118
CEVF01086699
[CEVF] marine metagenome genome assembly TARA_124_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
727
802
+
Met
CAT
[ENA]
¢þ
>WENV170657401
JTFO01142150
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
184
109
-
Met
CAT
[ENA]
¢þ
>WENV170898265
MDTD01123300
[MDTD] marine metagenome; seawater
39592
39667
+
Met
CAT
[ENA]
¢þ
>C181226981
LT907975
Thermodesulfobacteriota
Pseudodesulfovibrio profundus 500-1 [LT907975]
2517534
2517609
+
Met
CAT
-
¡û
>W1911738032
QTZO01000023
Thermodesulfobacteriota
Pseudodesulfovibrio sp. S3 [QTZO]
35551
35476
-
Met
CAT
[ENA]
¡û
>W10111399
ADDI01000039
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [ADDI]
10237
10312
+
Met
CAT
[ENA]
¡û
>C11106839
CP002431
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [CP002431]
343383
343458
+
Met
CAT
[Ensembl]
¡û
>W11114342
ADDI01000039
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [ADDI]
10237
10312
+
Met
CAT
[ENA]
¡û
>W11149135
AEUJ01000005
Thermodesulfobacteriota
Pseudodesulfovibrio mercurii ND132 [AEUJ]
779260
779185
-
Met
CAT
[ENA]
¡û
>C121008998
CP003220
Thermodesulfobacteriota
Pseudodesulfovibrio mercurii ND132 [CP003220]
3054532
3054457
-
Met
CAT
[Ensembl]
¡û
>C161068240
CP014206
Thermodesulfobacteriota
Pseudodesulfovibrio indicus J2 [CP014206]
67488
67563
+
Met
CAT
[Ensembl]
¡û
>W1610046072
BBCB01000097
Thermodesulfobacteriota
Salidesulfovibrio brasiliensis JCM 12178 [BBCB]
3476
3401
-
Met
CAT
[ENA]
¡û
>C131017944
FO203427
Thermodesulfobacteriota
Pseudodesulfovibrio piezophilus C1TLV30 type strain: C1TLV30 [FO203427]
1920769
1920694
-
Met
CAT
[Ensembl]
¡û
>W1710042868
BBCB01000097
Thermodesulfobacteriota
Salidesulfovibrio brasiliensis JCM 12178 [BBCB]
3476
3401
-
Met
CAT
[ENA]
¡û
>W1710602316
FUYC01000017
Thermodesulfobacteriota
Paucidesulfovibrio gracilis DSM 16080 [FUYC]
11604
11529
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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